Examples of org.broadinstitute.gatk.utils.threading.ThreadEfficiencyMonitor

Package org.broadinstitute.gatk.utils.threading

Examples of org.broadinstitute.gatk.utils.threading.ThreadEfficiencyMonitor

org.broadinstitute.gatk.utils.threading.ThreadEfficiencyMonitor
Uses an MXBean to monitor thread efficiency Once the monitor is created, calls to threadIsDone() can be used to add information about the efficiency of the provided thread to this monitor. Provides simple print() for displaying efficiency information to a logger User: depristo Date: 8/22/12 Time: 10:48 AM

                                   final Collection<ReferenceOrderedDataSource> rods,
                                   final ThreadAllocation threadAllocation) {
        super(engine, walker, reads, reference, rods, threadAllocation);


        if ( threadAllocation.monitorThreadEfficiency() )
            setThreadEfficiencyMonitor(new ThreadEfficiencyMonitor());
    }

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     * @return a string representation of the percent occupancy of state, or NA is not possible
     */
    @Requires({"engine != null", "state != null"})
    @Ensures("result != null")
    private String getThreadEfficiencyPercent(final GenomeAnalysisEngine engine, final ThreadEfficiencyMonitor.State state) {
        final ThreadEfficiencyMonitor tem = engine.getThreadEfficiencyMonitor();
        return tem == null ? "NA" : String.format("%.2f", tem.getStatePercent(state));
    }

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