final ReadAnchoring anchoring = new ReadAnchoring(r,haplotypeGraph);
if (anchoring.isAnchoredSomewhere())
continue;
final int start = anchoring.leftAnchorIndex;
final int end = anchoring.rightAnchorIndex + haplotypeGraph.getKmerSize();
final GATKSAMRecord clipped = new ClippedGATKSAMRecord(r, start, end);
result.put(r, clipped);
}
return result;
}