Package org.broadinstitute.gatk.utils.sam

Examples of org.broadinstitute.gatk.utils.sam.ArtificialReadsTraversal

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    org.broadinstitute.gatk.tools.walkers.readutils.PrintReads walker;
    ArtificialGATKSAMFileWriter writer;

    @BeforeMethod
    public void before() {
        trav = new ArtificialReadsTraversal();
        readTotal = ( ( trav.endingChr - trav.startingChr ) + 1 ) * trav.readsPerChr + trav.unMappedReads;

        walker = new org.broadinstitute.gatk.tools.walkers.readutils.PrintReads();
        writer = new ArtificialGATKSAMFileWriter();
        walker.initialize();
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Related Classes of org.broadinstitute.gatk.utils.sam.ArtificialReadsTraversal

  • htsjdk.samtools.SAMFileHeader
  • org.broadinstitute.gatk.engine.contexts.ReferenceContext
  • org.broadinstitute.gatk.tools.walkers.readutils.PrintReadsUnitTest
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