Package org.broadinstitute.gatk.utils

Examples of org.broadinstitute.gatk.utils.MD5Mismatch

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                expecteds.add(fail.expectedMD5);
                diffEngineOutputs.add(fail.diffEngineOutput);
                logger.warn("Fail: " + fail.failMessage);
            }

            final MD5Mismatch failure = new MD5Mismatch(actuals, expecteds, diffEngineOutputs);
            Assert.fail(failure.toString());
        }

        return md5s;
    }
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        ProcessSettings ps = new ProcessSettings(cfg.getCmdLine().split("\\s+"));
        pc.execAndCheck(ps);

        MD5DB.MD5Match result = md5db.testFileMD5("testExtensions", "CatVariantsTestProvider", cfg.outputFile, cfg.md5, false);
        if(result.failed) {
            final MD5Mismatch failure = new MD5Mismatch(result.actualMD5, result.expectedMD5, result.diffEngineOutput);
            Assert.fail(failure.toString());
        }
    }
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        ps.setStdoutSettings(new OutputStreamSettings(cfg.pipedOutputFile));
        pc.execAndCheck(ps);

        MD5DB.MD5Match result = md5db.testFileMD5("LoggingIntegrationTest", "LoggingIntegrationTest", cfg.pipedOutputFile, output_argument_md5, false);
        if(result.failed) {
            final MD5Mismatch failure = new MD5Mismatch(result.actualMD5, result.expectedMD5, result.diffEngineOutput);
            Assert.fail(failure.toString());
        }
    }
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Related Classes of org.broadinstitute.gatk.utils.MD5Mismatch

  • org.broadinstitute.gatk.engine.walkers.WalkerTest
  • org.broadinstitute.gatk.tools.CatVariantsIntegrationTest
  • org.broadinstitute.gatk.utils.commandline.LoggingIntegrationTest
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