Package org.broadinstitute.gatk.tools.walkers.readutils

Examples of org.broadinstitute.gatk.tools.walkers.readutils.PrintReads


    public void testEmptyIntervalSetHandling() throws Exception {
        GenomeLocParser genomeLocParser = new GenomeLocParser(ArtificialSAMUtils.createArtificialSamHeader(1, 1, 1000).getSequenceDictionary());

        GenomeAnalysisEngine testEngine = new GenomeAnalysisEngine();

        testEngine.setWalker(new PrintReads());
        testEngine.setIntervals(new GenomeLocSortedSet(genomeLocParser));

        testEngine.validateSuppliedIntervals();
    }
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