Package org.broad.igv.ui

Examples of org.broad.igv.ui.TrackFilter

260
261
262
263
264
265
266
267
268
269
270
271
            for (Track track : tracks) {
                track.setVisible(true);
            }

        } else {
            TrackFilter filter = trackFilterPane.getFilter();
            IGV.getInstance().getSession().setFilter(filter);
            // Evaluate the filter elements
            filter.evaluate();
        }

    }
View Full Code Here
885
886
887
888
889
890
891
892
893
894
895
        String match = getAttribute(element, SessionAttribute.FILTER_MATCH.getText());
        String showAllTracks = getAttribute(element, SessionAttribute.FILTER_SHOW_ALL_TRACKS.getText());

        String filterName = getAttribute(element, SessionAttribute.NAME.getText());
        TrackFilter filter = new TrackFilter(filterName, null);
        additionalInformation.put(SessionElement.FILTER, filter);

        NodeList elements = element.getChildNodes();
        process(session, elements, additionalInformation, rootPath);
View Full Code Here
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
    }

    private void processFilterElement(Session session, Element element,
                                      HashMap additionalInformation, String rootPath) {

        TrackFilter filter = (TrackFilter) additionalInformation.get(SessionElement.FILTER);
        String item = getAttribute(element, SessionAttribute.ITEM.getText());
        String operator = getAttribute(element, SessionAttribute.OPERATOR.getText());
        String value = getAttribute(element, SessionAttribute.VALUE.getText());
        String booleanOperator = getAttribute(element, SessionAttribute.BOOLEAN_OPERATOR.getText());

        Operator opEnum = CollUtils.findValueOf(Operator.class, operator);
        BooleanOperator boolEnum = BooleanOperator.valueOf(booleanOperator.toUpperCase());
        TrackFilterElement trackFilterElement = new TrackFilterElement(filter, item,
                opEnum, value, boolEnum);
        filter.add(trackFilterElement);

        NodeList elements = element.getChildNodes();
        process(session, elements, additionalInformation, rootPath);
    }
View Full Code Here
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
        return xmlString;
    }


    private void writeFilters(Session session, Element globalElement, Document document) {
        TrackFilter trackFilter = session.getFilter();
        if (trackFilter != null) {

            Element filter = document.createElement(SessionElement.FILTER.getText());

            filter.setAttribute(SessionAttribute.NAME.getText(), trackFilter.getName());

            if (IGV.getInstance().isFilterMatchAll()) {
                filter.setAttribute(SessionAttribute.FILTER_MATCH.getText(), "all");
            } else if (!IGV.getInstance().isFilterMatchAll()) {
                filter.setAttribute(SessionAttribute.FILTER_MATCH.getText(), "any");
View Full Code Here
TOP

Related Classes of org.broad.igv.ui.TrackFilter

  • org.broad.igv.session.IGVSessionReader
  • org.broad.igv.session.SessionWriter
  • org.broad.igv.ui.action.FilterTracksMenuAction
  • org.broad.igv.util.FilterElement
  • java.util.Iterator
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.