Package org.broad.igv.sam

Examples of org.broad.igv.sam.FeatureWrappedAlignment

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        String nextLine;
        while ((nextLine = reader.readLine()) != null) {

            Feature f = codec.decode(nextLine);
            if(f != null && f instanceof BasicFeature) {
                return new FeatureWrappedAlignment((BasicFeature) f);
            }
        }
        return null;

    }
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Related Classes of org.broad.igv.sam.FeatureWrappedAlignment

  • org.broad.igv.sam.reader.PSLAlignmentParser
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