Package org.broad.igv.peaks

Examples of org.broad.igv.peaks.PeakCodec

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        } else if (MUTCodec.isMutationAnnotationFile(locator)) {
            return new MUTCodec(path, genome);
        } else if (fn.endsWith(".narrowpeak") || fn.endsWith(".broadpeak")) {
            return new EncodePeakCodec(genome);
        } else if (fn.endsWith(".peak")) {
            return new PeakCodec(genome);
        } else if (fn.endsWith(".eqtl")) {
            return new EQTLCodec(genome);
        } else if (fn.endsWith("fpkm_tracking")) {
            return new FPKMTrackingCodec(path);
            //} else if (fn.endsWith("gene_exp.diff") || fn.endsWith("cds_exp.diff")) {
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Related Classes of org.broad.igv.peaks.PeakCodec

  • org.broad.igv.feature.tribble.CodecFactory
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