Package org.broad.igv.goby

Examples of org.broad.igv.goby.GobyAlignmentQueryReader

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            }
        } else if (typeString.endsWith(".bam.list") || pathLowerCase.endsWith(".sam.list")) {
            reader = getBamListReader(locator.getPath(), requireIndex);
        } else if (GobyAlignmentQueryReader.supportsFileType(locator.getPath())) {
            try {
                reader = new GobyAlignmentQueryReader(locator.getPath());
            } catch (IOException e) {
                throw new RuntimeException("Cannot load Goby alignment " + locator.getPath(), e);

            }
        } else if (Ga4ghAlignmentReader.supportsFileType(locator.getType())) {
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Related Classes of org.broad.igv.goby.GobyAlignmentQueryReader

  • edu.cornell.med.icb.goby.alignments.AlignmentReaderImpl
  • edu.cornell.med.icb.identifier.DoubleIndexedIdentifier
  • edu.cornell.med.icb.identifier.IndexedIdentifier
  • it.unimi.dsi.lang.MutableString
  • org.broad.igv.sam.reader.AlignmentReaderFactory
  • java.util.ArrayList
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