Package org.broad.igv.data

Examples of org.broad.igv.data.NamedScore

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                                        accumulator = new Accumulator(windowFunction, 5);
                                    }
                                }

                                if (endBin > startBin) {
                                    scores.add(new NamedScore(s, e, v, probeName));
                                } else {
                                    if (!accumulator.hasData()) {
                                        accumulatedStart = s;
                                        accumulatedEnd = e;
                                        accumulator.add(e - s, v, probeName);
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    private LocusScore getCompositeScore(Accumulator accumulator, int accumulatedStart, int accumulatedEnd) {
        LocusScore ls;
        if (accumulator.getNpts() == 1) {
            ls = new NamedScore(accumulatedStart, accumulatedEnd, accumulator.getRepData()[0], accumulator.getRepProbes()[0]);
        } else {
            float value = accumulator.getValue();
            ls = new CompositeScore(accumulatedStart, accumulatedEnd, value, accumulator.getRepData(),
                    accumulator.getRepProbes(), windowFunction);
        }
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Related Classes of org.broad.igv.data.NamedScore

  • org.broad.igv.tdf.TDFDataSource
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