Package org.biopax.paxtools.model

Examples of org.biopax.paxtools.model.BioPAXElement

858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
            ListIterator nodeIterator = node.getChildren().listIterator();

            while( nodeIterator.hasNext() ) {
                ChsNodeEditPart oneObj = (ChsNodeEditPart) nodeIterator.next();
                Object oneModel = oneObj.getModel();
                BioPAXElement be = null;

                if( oneModel instanceof Actor)
                {
                    be = ((Actor) oneModel).getEntity();
                } else if( oneModel instanceof Complex)
                {
                    be = ((Complex) oneModel).getComplex();
                } else if( oneModel instanceof Conversion)
                {
                    be = ((Conversion) oneModel).getConversion();
                } else if( oneModel instanceof org.gvt.model.biopaxl2.Control)
                {
                    be = ((org.gvt.model.biopaxl2.Control) oneModel).getControl();
                }

                // We have the element and its type
                // Let's check whether it's rdf has a match
                // If so, simply higlight the node.
                if( be != null && rdfs.contains(be.getRDFId()) )
                {
                    ((GraphObject) oneModel).setHighlightColor(higlightColor);
                    ((GraphObject) oneModel).setHighlight(true);
                }
View Full Code Here
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
            ListIterator nodeIterator = node.getChildren().listIterator();

            while( nodeIterator.hasNext() ) {
                ChsNodeEditPart oneObj = (ChsNodeEditPart) nodeIterator.next();
                Object oneModel = oneObj.getModel();
                BioPAXElement be = null;

                if( oneModel instanceof Actor)
                {
                    be = ((Actor) oneModel).getEntity();
                } else if( oneModel instanceof Complex)
                {
                    be = ((Complex) oneModel).getComplex();
                } else if( oneModel instanceof Conversion)
                {
                    be = ((Conversion) oneModel).getConversion();
                } else if( oneModel instanceof org.gvt.model.biopaxl2.Control)
                {
                    be = ((org.gvt.model.biopaxl2.Control) oneModel).getControl();
                }

                // We have the element and its type
                // Let's check whether it's rdf has a match
                // If so, simply higlight the node.
                if( be != null && rdfs.contains(be.getRDFId()) )
                {
                    ((GraphObject) oneModel).setHighlightColor(higlightColor);
                    ((GraphObject) oneModel).setHighlight(true);
                }
View Full Code Here
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
            ListIterator nodeIterator = node.getChildren().listIterator();

            while( nodeIterator.hasNext() ) {
                ChsNodeEditPart oneObj = (ChsNodeEditPart) nodeIterator.next();
                Object oneModel = oneObj.getModel();
                BioPAXElement be = null;

                if( oneModel instanceof Actor)
                {
                    be = ((Actor) oneModel).getEntity().l2pe;
                } else if( oneModel instanceof Complex)
                {
                    be = ((Complex) oneModel).getComplex();
                } else if( oneModel instanceof Conversion)
                {
                    be = ((Conversion) oneModel).getConversion();
                } else if( oneModel instanceof org.gvt.model.biopaxl2.Control)
                {
                    be = ((org.gvt.model.biopaxl2.Control) oneModel).getControl();
                }

                // We have the element and its type
                // Let's check whether it's rdf has a match
                // If so, simply higlight the node.
                if( be != null && rdfs.contains(be.getRDFId()) )
                {
                    ((GraphObject) oneModel).setHighlightColor(higlightColor);
                    ((GraphObject) oneModel).setHighlight(true);
                }
View Full Code Here
TOP

Related Classes of org.biopax.paxtools.model.BioPAXElement

  • org.gvt.ChisioMain
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.