Package org.biopax.paxtools.io.sif

Examples of org.biopax.paxtools.io.sif.SimpleInteractionConverter

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    for (BinaryInteractionType ruleType : getPossibleRuleTypes())
    {
      options.put(ruleType, ruleTypes.contains(ruleType));
    }

    SimpleInteractionConverter converter = new SimpleInteractionConverter(options, rules);
    return converter.inferInteractions(this.getBiopaxModel());
  }
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    for (BinaryInteractionType ruleType : getPossibleRuleTypes(biopaxModel.getLevel()))
    {
      options.put(ruleType, ruleTypes.contains(ruleType));
    }

    SimpleInteractionConverter converter = new SimpleInteractionConverter(options, rules);
    return converter.inferInteractions(this.getBiopaxModel());
  }
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Related Classes of org.biopax.paxtools.io.sif.SimpleInteractionConverter

  • org.gvt.model.sif.SIFGraph
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