Examples of org.biojava.ontology.Term$Impl

org.biojava.ontology.Term
Simple in-memory implementation of an ontology term. @see org.biojavax.ontology.SimpleComparableTerm This can be used to implement Ontology.createTerm

            StringTokenizer toke = new StringTokenizer(line);
            String subject = toke.nextToken();
            String predicate = toke.nextToken();
            String object = toke.nextToken();


            Term subT = resolveTerm(subject, onto);
            Term objT = resolveTerm(object, onto);
            Term relT = resolveTerm(predicate, onto);


            Triple trip = resolveTriple(subT, objT, relT, onto);
            trip = trip==null?null:trip; // prevent unused field error
          } catch (StringIndexOutOfBoundsException e) {
            throw new IOException("Could not parse line: " + line);

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          String source = termName.substring(1, c1);
          String target = termName.substring(c2 + 1, termName.length() - 1);
          String predicate = termName.substring(c1 + 1, c2);


          Term st = resolveTerm(source, onto);
          Term tt = resolveTerm(target, onto);
          Term rt = resolveTerm(predicate, onto);


          return onto.createTriple(st, tt, rt, null, null);
        } else {
          return onto.createTerm(termName, "");
        }

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          key.equals(RELATIONSHIP) || 
          key.equals(DISJOINT_FROM) ||
          key.equals(INTERSECTION_OF) ||
          key.equals(SUBSET)) {
        try {
          Term object = ontology.containsTerm(value) ?
            object = ontology.getTerm(value): ontology.createTerm(value);
          Term predicate = ontology.containsTerm(key) ? ontology.getTerm(key) : ontology.createTerm(key);
                 ontology.createTriple(currentTerm, object, predicate, currentTerm + " " + predicate + " " + object, key+"-relationship");              
        } catch (AlreadyExistsException ex) {
        }
                
      } else if (key.equals(COMMENT)){

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