Package org.biojava.ontology

Examples of org.biojava.ontology.Ontology$Impl

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   */
  public Ontology parse(BufferedReader in, OntologyFactory of)
  throws IOException, OntologyException {
    String name = "";
    String description = "";
    Ontology onto = null;

    for(
      String line = in.readLine();
      line != null;
      line = in.readLine()
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            )
  throws ParseException, IOException {
   
     try {
       OntologyFactory factory = OntoTools.getDefaultFactory();
       Ontology ontology = factory.createOntology(ontoName, ontoDescription);
      
           OboFileParser parser = new OboFileParser();
          
           OboFileEventListener handler = new OboFileHandler(ontology);
          
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