Package org.bioinfo.ngs.qc.qualimap.process

Examples of org.bioinfo.ngs.qc.qualimap.process.SampleInfo

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        pack();

        // Default data  for testing
        if (System.getenv("QUALIMAP_DEBUG") != null)  {
            SampleInfo s1 = new SampleInfo();
            s1.name = "MCF7";
            s1.path = "/data/fusions-data/breast_cancer_MCF7/tophat_out/accepted_hits_stats";
            sampleTableModel.addItem(s1);


            SampleInfo s2 = new SampleInfo();
            s2.name = "Kidney";
            s2.path = "/data/qualimap_release_data/counts/kidney_stats";
            sampleTableModel.addItem(s2);

            SampleInfo s3 = new SampleInfo();
            s3.name = "Liver";
            s3.path = "/data/qualimap_release_data/counts/liver_stats";
            sampleTableModel.addItem(s3);

            SampleInfo s4 = new SampleInfo();
            s4.name = "Plasmodium DNA";
            s4.path = "/data/qualimap_release_data/alignments/Plasmodium-falciparum-3D7_stats";
            sampleTableModel.addItem(s4);

        }
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        public int getColumnCount() {
            return columnNames.length;
        }
        @Override
        public Object getValueAt(int i, int j) {
            SampleInfo sampleInfo = sampleReplicateList.get(i);

            if (j == 0) {
                return sampleInfo.name;
            } else if (j == 1) {
                return sampleInfo.path;
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        this.itemIndex = itemIndex;
        editMode = true;

        initComponents();

        SampleInfo itemToModify = parentDlg.getDataItem(itemIndex);
        sampleName.setText(itemToModify.name);
        pathField.setText(itemToModify.path);


    }
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        okButton.addActionListener( new ActionListener() {
            @Override
            public void actionPerformed(ActionEvent actionEvent) {
                String errorMessage  = validateInputData();
                if (errorMessage.isEmpty()) {
                    SampleInfo item = new SampleInfo();
                    item.name = sampleName.getText();
                    item.path = pathField.getText();
                    if (editMode) {
                        parentDlg.replaceDataItem(itemIndex, item);
                    } else {
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Related Classes of org.bioinfo.ngs.qc.qualimap.process.SampleInfo

  • org.bioinfo.ngs.qc.qualimap.gui.dialogs.EditSampleInfoDialog
  • org.bioinfo.ngs.qc.qualimap.gui.panels.MultisampleBamQcDialog
  • org.bioinfo.ngs.qc.qualimap.gui.panels.MultisampleBamQcDialog$SampleDataTableModel
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