Package org.bioinfo.ngs.qc.qualimap.gui.utils

Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.TabPageController

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        } else if ( actionCommand.equals(Constants.COMMAND_RUN_ANALYSIS) ) {

            String errMsg = validateInput();
            if (errMsg.isEmpty()) {
                resetProgress();
                TabPageController tabController = new TabPageController(AnalysisType.COUNTS_QC);
                CountsQCAnalysisThread t = new CountsQCAnalysisThread(this, tabController );
                t.start();
            } else {
                JOptionPane.showMessageDialog(this, errMsg, "Validate Input", JOptionPane.ERROR_MESSAGE);
            }
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   * Function that calls a thread that create the pdf file with the data read in the selected tab
   * and save it into the disk.
     * @param path Output PDF path
     */
  private void exportToPdf(String path){
    TabPageController tabController = homeFrame.getSelectedTabPageController();

    ExportPdfThread t =
      new ExportPdfThread(this, tabController, path);

    t.start();
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    t.start();
  }

 
  private void exportToHtml(String dirPath) {
        TabPageController tabController = homeFrame.getSelectedTabPageController();

        ExportHtmlThread t =
                new ExportHtmlThread(this, tabController, dirPath);

        t.start();
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        } else if ( actionCommand.equals(Constants.COMMAND_RUN_ANALYSIS) ) {

            String errMsg = validateInput();
            if (errMsg.isEmpty()) {
                resetProgress();
                TabPageController tabController = new TabPageController(AnalysisType.MULTISAMPLE_BAM_QC);
                MultisampleBamQcThread t = new MultisampleBamQcThread(this, tabController );
                t.start();
            } else {
                JOptionPane.showMessageDialog(this, errMsg, "Validate Input", JOptionPane.ERROR_MESSAGE);
            }
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            }
        } else if ( actionCommand.equals(Constants.COMMAND_RUN_ANALYSIS) ) {

            String errMsg = validateInput();
            if (errMsg.isEmpty()) {
                TabPageController tabController = new TabPageController(AnalysisType.CLUSTERING);
                EpigeneticsAnalysisThread t = new EpigeneticsAnalysisThread(this, tabController );
                t.start();
            } else {
                JOptionPane.showMessageDialog(this, errMsg, "Validate Input", JOptionPane.ERROR_MESSAGE);
            }
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            if (!errMsg.isEmpty()) {
                JOptionPane.showMessageDialog(this, errMsg, getTitle(), JOptionPane.ERROR_MESSAGE);
                return;
            }

            TabPageController tabPageController = new TabPageController(AnalysisType.RNA_SEQ_QC);
            RNASeqQCAnalysisThread t = new RNASeqQCAnalysisThread(this, tabPageController);
            t.start();


        }  else if (actionEvent.getActionCommand().equals(Constants.CANCEL_COMMAND)) {
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Related Classes of org.bioinfo.ngs.qc.qualimap.gui.utils.TabPageController

  • org.bioinfo.ngs.qc.qualimap.gui.panels.CountsQcDialog
  • org.bioinfo.ngs.qc.qualimap.gui.panels.EpigeneticAnalysisDialog
  • org.bioinfo.ngs.qc.qualimap.gui.panels.MultisampleBamQcDialog
  • org.bioinfo.ngs.qc.qualimap.gui.panels.RNASeqQCDialog
  • org.bioinfo.ngs.qc.qualimap.gui.panels.SavePanel
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