Package org.bioinfo.ngs.qc.qualimap.gui.threads

Examples of org.bioinfo.ngs.qc.qualimap.gui.threads.ExportHtmlThread

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            reporter.computeChartsBuffers(bamQC.getBamStats(), bamQC.getLocator(), bamQC.isPairedData());

            AnalysisResultManager resultManager = new AnalysisResultManager(AnalysisType.BAM_QC);
            resultManager.addReporter(reporter);

            Thread exportReportThread = new ExportHtmlThread(resultManager,sampleOutdir);
            exportReportThread.run();
            loggerThread.updateProgress(100);
            loggerThread.logLine("Finished processing " + bamFilePath + "\n");
            loggerThread.logLine("BAM QC results are saved to  " + sampleOutdir + "\n");

            s.path = sampleOutdir;
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            }
        }

        Thread exportReportThread = outputType.equals( Constants.REPORT_TYPE_PDF ) ?
               new ExportPdfThread(resultManager, reportFileName  ) :
               new ExportHtmlThread(resultManager, outdir);

         exportReportThread.run();
    }
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  private void exportToHtml(String dirPath) {
        TabPageController tabController = homeFrame.getSelectedTabPageController();

        ExportHtmlThread t =
                new ExportHtmlThread(this, tabController, dirPath);

        t.start();
    }
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Related Classes of org.bioinfo.ngs.qc.qualimap.gui.threads.ExportHtmlThread

  • org.bioinfo.ngs.qc.qualimap.beans.ChartRawDataWriter
  • org.bioinfo.ngs.qc.qualimap.beans.QChart
  • org.bioinfo.ngs.qc.qualimap.common.AnalysisType
  • org.bioinfo.ngs.qc.qualimap.common.HtmlReportGenerator
  • org.bioinfo.ngs.qc.qualimap.gui.panels.SavePanel
  • org.bioinfo.ngs.qc.qualimap.main.NgsSmartTool
  • org.bioinfo.ngs.qc.qualimap.process.MultisampleBamQcAnalysis
  • java.util.zip.ZipEntry
  • java.awt.image.BufferedImage
  • java.util.zip.ZipInputStream
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