Package org.bioinfo.ngs.qc.qualimap.common

Examples of org.bioinfo.ngs.qc.qualimap.common.JunctionLocationMap

34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
public class JunctionLocationMapTest {

    @Test
    public void simpleTests() {

        JunctionLocationMap locationMap = new JunctionLocationMap();

        locationMap.put("chr1", 25, 30);
        locationMap.put("chr1", 25, 80);
        locationMap.put("chr1", 100, 200);
        assert(locationMap.size("chr1") == 4);


        locationMap.setupIntervalTreeMap();

        assertTrue(locationMap.hasOverlap("chr1", 26));
        assertTrue(locationMap.hasOverlap("chr1", 79));
        assertFalse(locationMap.hasOverlap("chr1", 780));




View Full Code Here
TOP

Related Classes of org.bioinfo.ngs.qc.qualimap.common.JunctionLocationMap

  • org.bioinfo.ngs.qc.qualimap.test.JunctionLocationMapTest
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.