Package org.bioinfo.ngs.qc.qualimap.beans

Examples of org.bioinfo.ngs.qc.qualimap.beans.BamDetailedGenomeWindow

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        byte[]miniReference = null;
    if(reference != null) {
      miniReference = Arrays.copyOfRange(reference, (int) (windowStart - 1), (int) (windowEnd - 1));
    }

        BamGenomeWindow w = detailed ? new BamDetailedGenomeWindow(name,windowStart,windowEnd,miniReference) :
                    new BamGenomeWindow(name,windowStart,windowEnd,miniReference);

        if (selectedRegionsAvailable) {
            calculateRegionsLookUpTableForWindow(w);
        }
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Related Classes of org.bioinfo.ngs.qc.qualimap.beans.BamDetailedGenomeWindow

  • org.bioinfo.ngs.qc.qualimap.process.BamStatsAnalysis
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