Package org.apache.uima.cas

Examples of org.apache.uima.cas.FSIndexRepository

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         * Test deleting FSs from indexes.
         */
  public void testDelete() {
    // Create a bunch of FSs.
    FeatureStructure[] fsArray = new FeatureStructure[100];
    FSIndexRepository ir = this.cas.getIndexRepository();
    for (int i = 0; i < fsArray.length; i++) {
      fsArray[i] = this.cas.createAnnotation(this.tokenType, i * 5, (i * 5) + 4);
      ir.addFS(fsArray[i]);
    }
    FSIndex setIndex = this.cas.getIndexRepository().getIndex(CASTestSetup.ANNOT_SET_INDEX,
  this.tokenType);
    FSIterator setIt = setIndex.iterator();
    FSIndex sortedIndex = this.cas.getAnnotationIndex(this.tokenType);
    FSIterator sortedIt = sortedIndex.iterator();
    FSIndex bagIndex = ir.getIndex(CASTestSetup.ANNOT_BAG_INDEX, this.tokenType);
    FSIterator bagIt = bagIndex.iterator();
    // For each index, check that the FSs are actually in the index.
    for (int i = 0; i < fsArray.length; i++) {
      setIt.moveTo(fsArray[i]);
      assertTrue(setIt.isValid());
      assertTrue(setIt.get().equals(fsArray[i]));
      bagIt.moveTo(fsArray[i]);
      assertTrue(bagIt.isValid());
      assertTrue(bagIt.get().equals(fsArray[i]));
      sortedIt.moveTo(fsArray[i]);
      assertTrue(sortedIt.isValid());
      assertTrue(sortedIt.get().equals(fsArray[i]));
    }
    // Remove an annotation, then add it again. Try setting the iterators to
    // that FS. The iterator should either be invalid, or point to a
    // different FS.
    for (int i = 0; i < fsArray.length; i++) {
      ir.removeFS(fsArray[i]);
      setIt.moveTo(fsArray[i]);
      if (setIt.isValid()) {
  int oldRef = this.cas.ll_getFSRef(fsArray[i]);
  int newRef = this.cas.ll_getFSRef(setIt.get());
  assertTrue(oldRef != newRef);
  assertTrue(!setIt.get().equals(fsArray[i]));
      }
      bagIt.moveTo(fsArray[i]);
      if (bagIt.isValid()) {
  assertTrue(!bagIt.get().equals(fsArray[i]));
      }
      sortedIt.moveTo(fsArray[i]);
      if (sortedIt.isValid()) {
  assertTrue(!sortedIt.get().equals(fsArray[i]));
      }
      ir.addFS(fsArray[i]);
    }
    // Remove all annotations.
    for (int i = 0; i < fsArray.length; i++) {
      ir.removeFS(fsArray[i]);
    }
    // All iterators should be invalidated when being reset.
    bagIt.moveToFirst();
    assertFalse(bagIt.isValid());
    setIt.moveToFirst();
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      Type et = ts.getType("EnumType");
      Assert.assertEquals("EnumType", et.getName());
      Assert.assertEquals(et, f2.getRange());

      // indexes
      FSIndexRepository irep = cas.getIndexRepository();
      FSIndex ind = irep.getIndex("Index1");
      Assert.assertNotNull(ind);
      Assert.assertEquals("Type1", ind.getType().getName());
      Assert.assertEquals(FSIndex.SORTED_INDEX, ind.getIndexingStrategy());

      FeatureStructure fs1 = cas.createFS(t1);
      fs1.setIntValue(f1, 0);
      FeatureStructure fs2 = cas.createFS(t1);
      fs2.setIntValue(f1, 1);
      Assert.assertTrue(ind.compare(fs1, fs2) < 0);

      FSIndex ind2 = irep.getIndex("Index2");
      Assert.assertNotNull(ind2);
      Assert.assertEquals("Type2", ind2.getType().getName());
      Assert.assertEquals(FSIndex.SET_INDEX, ind2.getIndexingStrategy());

      FeatureStructure fs3 = cas.createFS(t2);
      fs3.setStringValue(f2, "One");
      FeatureStructure fs4 = cas.createFS(t2);
      fs4.setStringValue(f2, "Two");
      Assert.assertTrue(ind2.compare(fs3, fs4) > 0);

      FSIndex ind3 = irep.getIndex("Index3");
      Assert.assertNotNull(ind3);
      Assert.assertEquals("uima.tcas.Annotation", ind3.getType().getName());
      Assert.assertEquals(FSIndex.SORTED_INDEX, ind3.getIndexingStrategy());

      AnnotationFS fs5 = cas.createAnnotation(t1, 0, 0);
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      this.cas.getIndexRepository().addFS(
          this.cas.createAnnotation(this.tokenType, i * 2, (i * 2) + 1));
    }
    final int start = 5;
    final int end = 7;
    FSIndexRepository repo = this.cas.getIndexRepository();
    for (int i = 0; i < 10; i++) {
      AnnotationFS annotation = this.cas.createAnnotation(this.annotationType, start, end);
      repo.addFS(annotation);
    }
    AnnotationFS match = this.cas.createAnnotation(this.annotationType, start, end);
    FSIndex<AnnotationFS> index = this.cas.getAnnotationIndex();
    FSIterator<AnnotationFS> it = index.iterator();
    it.moveTo(match);
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    assertTrue(ok);

  }
 
  private void addAnnotations(AnnotationFS[] fsArray, Type type) {
    FSIndexRepository ir = this.cas.getIndexRepository();   
    for (int i = 0; i < fsArray.length; i++) {
      // key order:
      //   0 ... 50 200 ... 160  66 66 66 ..
      // item order
      //   0 - 50, 90 - 99, 89 - 60
      int j = (i >= 90) ? 66 :           // some constant keys
              (i > 50) ? 200 - i :       // some decreasing keys
              i;                         // some increasing keys
      fsArray[i] = this.cas.createAnnotation(type, j * 5, (j * 5) + 4);
      ir.addFS(fsArray[i]);
    }
  }
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  public void testDelete() {
    // Create a bunch of FSs.
    // have 10% of them be the same key
    // have the order be scrambled somewhat, not strictly increasing
    AnnotationFS[] fsArray = new AnnotationFS[100];
    FSIndexRepository ir = this.cas.getIndexRepository();
    addAnnotations(fsArray, this.tokenType);

    FSIndex<FeatureStructure> setIndex = this.cas.getIndexRepository().getIndex(
        CASTestSetup.ANNOT_SET_INDEX, this.tokenType);
    FSIterator<FeatureStructure> setIt = setIndex.iterator();
   
    FSIndex<AnnotationFS> sortedIndex = this.cas.getAnnotationIndex(this.tokenType);
    FSIterator<AnnotationFS> sortedIt = sortedIndex.iterator();
   
    FSIndex<FeatureStructure> bagIndex = ir.getIndex(CASTestSetup.ANNOT_BAG_INDEX, this.tokenType);
    FSIterator<FeatureStructure> bagIt = bagIndex.iterator();
   
    // verify that the index is the right type https://issues.apache.org/jira/browse/UIMA-2883
    assertEquals(setIndex.getIndexingStrategy(),FSIndex.SET_INDEX);
    assertEquals(sortedIndex.getIndexingStrategy(),FSIndex.SORTED_INDEX);
    assertEquals(bagIndex.getIndexingStrategy(),FSIndex.BAG_INDEX);
   
    // For each index, check that the FSs are actually in the index.
    for (int i = 0; i < fsArray.length; i++) {
      setIt.moveTo(fsArray[i]);
      assertTrue(setIt.isValid());
      assertTrue(setIt.get().equals(fsArray[(i < 90) ? i : 90]));

      bagIt.moveTo(fsArray[i]);
      assertTrue(bagIt.isValid());
      assertTrue(bagIt.get().equals(fsArray[i]));
     
      sortedIt.moveTo(fsArray[i]);
      assertTrue(sortedIt.isValid());
      fsBeginEndEqual(sortedIt.get(), fsArray[i]);
    }
    sortedIt.moveToFirst();
    // item order
    //   0 - 50, 90 - 99, 89 - 60   
    for (int i = 0; i < fsArray.length; i++) {
      int j = (i >= 61) ? (89 - (i - 61)) :
              (i >= 51) ? 90 :
              i;
      fsBeginEndEqual(sortedIt.get(), fsArray[j]);
      sortedIt.moveToNext();
    }
    assertFalse(sortedIt.isValid());
   
    // Remove an annotation, then add it again. Try setting the iterators to
    // that FS. The iterator should either be invalid, or point to a
    // different FS.
    for (int i = 0; i < fsArray.length; i++) {
      ir.removeFS(fsArray[i]);
      ir.removeFS(fsArray[i]);  // a 2nd remove should be a no-op https://issues.apache.org/jira/browse/UIMA-2934
      setIt.moveTo(fsArray[i]);
      if (setIt.isValid()) {
        int oldRef = this.cas.ll_getFSRef(fsArray[i]);
        int newRef = this.cas.ll_getFSRef(setIt.get());
        assertTrue(oldRef != newRef);
        assertTrue(!setIt.get().equals(fsArray[i]));
      }
      bagIt.moveTo(fsArray[i]);
      if (bagIt.isValid()) {
        assertTrue(!bagIt.get().equals(fsArray[i]));
      }
      sortedIt.moveTo(fsArray[i]);
      if (sortedIt.isValid()) {
        assertTrue(!sortedIt.get().equals(fsArray[i]));
      }
      ir.addFS(fsArray[i]);
    }
    // Remove all annotations.
    for (int i = 0; i < fsArray.length; i++) {
      ir.removeFS(fsArray[i]);
    }
    // All iterators should be invalidated when being reset.
    bagIt.moveToFirst();
    assertFalse(bagIt.isValid());
    setIt.moveToFirst();
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  }

  public void testRemoveAll() {
    AnnotationFS[] fsArray = new AnnotationFS[100];
    AnnotationFS[] subFsArray = new AnnotationFS[100];
    FSIndexRepository ir = this.cas.getIndexRepository();
   
    addAnnotations(fsArray, ts.getType("Sentence"));
    addAnnotations(subFsArray, ts.getType("SubTypeOfSentence"));
   
    FSIndex<FeatureStructure> setIndex = ir.getIndex(CASTestSetup.ANNOT_SET_INDEX, this.sentenceType);
    FSIndex<FeatureStructure> bagIndex = ir.getIndex(CASTestSetup.ANNOT_BAG_INDEX, this.sentenceType);
    FSIndex<AnnotationFS> sortedIndex = this.cas.getAnnotationIndex(this.sentenceType);

    FSIndex<FeatureStructure> subsetIndex = ir.getIndex(CASTestSetup.ANNOT_SET_INDEX, this.subsentenceType);
    FSIndex<FeatureStructure> subbagIndex = ir.getIndex(CASTestSetup.ANNOT_BAG_INDEX, this.subsentenceType);
    FSIndex<AnnotationFS>     subsortedIndex = this.cas.getAnnotationIndex(this.subsentenceType);

    FSIterator<FeatureStructure> setIt = setIndex.iterator();
    FSIterator<FeatureStructure> bagIt = bagIndex.iterator();
    FSIterator<AnnotationFS> sortedIt = sortedIndex.iterator();

    FSIterator<FeatureStructure> subsetIt = subsetIndex.iterator();
    FSIterator<FeatureStructure> subbagIt = subbagIndex.iterator();
    FSIterator<AnnotationFS> subsortedIt = subsortedIndex.iterator();

    verifyMoveToFirst(setIt, true);
    verifyMoveToFirst(bagIt, true);
    verifyMoveToFirst(sortedIt, true);
    verifyMoveToFirst(subsetIt, true);
    verifyMoveToFirst(subbagIt, true);
    verifyMoveToFirst(subsortedIt, true);
   
    ir.removeAllIncludingSubtypes(sentenceType);
    verifyConcurrantModificationDetected(setIt);
    verifyConcurrantModificationDetected(bagIt);
    verifyConcurrantModificationDetected(sortedIt);
    verifyConcurrantModificationDetected(subsetIt);
    verifyConcurrantModificationDetected(subbagIt);
    verifyConcurrantModificationDetected(subsortedIt);

    verifyMoveToFirst(setIt, false);
    verifyMoveToFirst(bagIt, false);
    verifyMoveToFirst(sortedIt, false);
    verifyMoveToFirst(subsetIt, false);
    verifyMoveToFirst(subbagIt, false);
    verifyMoveToFirst(subsortedIt, false);

    for (AnnotationFS fs : fsArray) {
      ir.addFS(fs);
    }
    for (AnnotationFS fs : subFsArray) {
      ir.addFS(fs);
    }

    verifyMoveToFirst(setIt, true);
    verifyMoveToFirst(bagIt, true);
    verifyMoveToFirst(sortedIt, true);
    verifyMoveToFirst(subsetIt, true);
    verifyMoveToFirst(subbagIt, true);
    verifyMoveToFirst(subsortedIt, true);

    ir.removeAllExcludingSubtypes(this.sentenceType);
   
    verifyHaveSubset(setIt, 91, subsentenceType);
    verifyHaveSubset(bagIt, 100, subsentenceType);
    verifyHaveSubset(sortedIt, 100, subsentenceType);
    verifyHaveSubset(subsetIt, 91, subsentenceType);
    verifyHaveSubset(subbagIt, 100, subsentenceType);
    verifyHaveSubset(subsortedIt, 100, subsentenceType);
   
    for (AnnotationFS fs : fsArray) {
      ir.addFS(fs);
    }
   
    ir.removeAllExcludingSubtypes(subsentenceType);

    verifyHaveSubset(setIt, 91, sentenceType);
    verifyHaveSubset(bagIt, 100, sentenceType);
    verifyHaveSubset(sortedIt, 100, sentenceType);
    verifyMoveToFirst(subsetIt, false);
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    assertTrue(i3 != null);
  }

  public void testGetFSIndexRepository() throws Exception {
    try {
      FSIndexRepository ir = jcas.getFSIndexRepository();
      LowLevelIndexRepository ll_ir = jcas.getLowLevelIndexRepository();

      assertTrue(ir != null);
      assertTrue(ir == cas.getIndexRepository());
      assertTrue(ll_ir != null);
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      Type et = ts.getType("EnumType");
      Assert.assertEquals("EnumType", et.getName());
      Assert.assertEquals(et, f2.getRange());

      // indexes
      FSIndexRepository irep = cas.getIndexRepository();
      FSIndex ind = irep.getIndex("Index1");
      Assert.assertNotNull(ind);
      Assert.assertEquals("Type1", ind.getType().getName());
      Assert.assertEquals(FSIndex.SORTED_INDEX, ind.getIndexingStrategy());

      FeatureStructure fs1 = cas.createFS(t1);
      fs1.setIntValue(f1, 0);
      FeatureStructure fs2 = cas.createFS(t1);
      fs2.setIntValue(f1, 1);
      Assert.assertTrue(ind.compare(fs1, fs2) < 0);

      FSIndex ind2 = irep.getIndex("Index2");
      Assert.assertNotNull(ind2);
      Assert.assertEquals("Type2", ind2.getType().getName());
      Assert.assertEquals(FSIndex.SET_INDEX, ind2.getIndexingStrategy());

      FeatureStructure fs3 = cas.createFS(t2);
      fs3.setStringValue(f2, "One");
      FeatureStructure fs4 = cas.createFS(t2);
      fs4.setStringValue(f2, "Two");
      Assert.assertTrue(ind2.compare(fs3, fs4) > 0);

      FSIndex ind3 = irep.getIndex("Index3");
      Assert.assertNotNull(ind3);
      Assert.assertEquals("uima.tcas.Annotation", ind3.getType().getName());
      Assert.assertEquals(FSIndex.SORTED_INDEX, ind3.getIndexingStrategy());

      AnnotationFS fs5 = cas.createAnnotation(t1, 0, 0);
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    } else {
      root.setUserObject(noIndexReposLabel);
    }
    root.removeAllChildren();
    if (this.cas != null && useCAS) {
      FSIndexRepository ir = this.cas.getIndexRepository();
      Iterator<String> it = ir.getLabels();
      while (it.hasNext()) {
        String label = it.next();
        FSIndex index1 = ir.getIndex(label);
        IndexTreeNode nodeObj = new IndexTreeNode(label, index1.getType(), index1.size());
        DefaultMutableTreeNode node = new DefaultMutableTreeNode(nodeObj);
        root.add(node);
        node.add(createTypeTree(index1.getType(), this.cas.getTypeSystem(), label, ir));
      }
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    } else {
      root.setUserObject(noIndexReposLabel);
    }
    root.removeAllChildren();
    if (this.cas != null && useCAS) {
      FSIndexRepository ir = this.cas.getIndexRepository();
      Iterator<String> it = ir.getLabels();
      while (it.hasNext()) {
        String label = it.next();
        FSIndex index1 = ir.getIndex(label);
        IndexTreeNode nodeObj = new IndexTreeNode(label, index1.getType(), index1.size());
        DefaultMutableTreeNode node = new DefaultMutableTreeNode(nodeObj);
        root.add(node);
        node.add(createTypeTree(index1.getType(), this.cas.getTypeSystem(), label, ir));
      }
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