Package org.apache.maven.continuum.model.project

Examples of org.apache.maven.continuum.model.project.ContinuumDatabase

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    protected ConfigurableJdoFactory factory;

    public void backupDatabase( File backupDirectory )
        throws IOException
    {
        ContinuumDatabase database = new ContinuumDatabase();
        try
        {
            database.setSystemConfiguration( systemConfigurationDao.getSystemConfiguration() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }

        // TODO: need these to lazy load to conserve memory while we stream out the model
        Collection projectGroups = projectGroupDao.getAllProjectGroupsWithTheLot();
        database.setProjectGroups( new ArrayList( projectGroups ) );
        try
        {
            database.setInstallations( installationDao.getAllInstallations() );

            database.setBuildDefinitionTemplates( buildDefinitionTemplateDao.getAllBuildDefinitionTemplate() );

            database.setBuildQueues( buildQueueDao.getAllBuildQueues() );

            database.setBuildDefinitions( buildDefinitionDao.getAllTemplates() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }
        database.setSchedules( scheduleDao.getAllSchedulesByName() );
        database.setProfiles( profileDao.getAllProfilesByName() );
        database.setLocalRepositories( localRepositoryDao.getAllLocalRepositories() );
        database.setRepositoryPurgeConfigurations(
            repositoryPurgeConfigurationDao.getAllRepositoryPurgeConfigurations() );
        database.setDirectoryPurgeConfigurations( directoryPurgeConfigurationDao.getAllDirectoryPurgeConfigurations() );
        database.setProjectScmRoots( projectScmRootDao.getAllProjectScmRoots() );
        database.setContinuumReleaseResults( releaseResultDao.getAllContinuumReleaseResults() );

        ContinuumStaxWriter writer = new ContinuumStaxWriter();

        File backupFile = new File( backupDirectory, BUILDS_XML );
        File parentFile = backupFile.getParentFile();
        parentFile.mkdirs();

        OutputStream out = new FileOutputStream( backupFile );
        Writer fileWriter = new OutputStreamWriter( out, Charset.forName( database.getModelEncoding() ) );

        try
        {
            writer.write( fileWriter, database );
        }
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    {
        ContinuumStaxReader reader = new ContinuumStaxReader();

        FileReader fileReader = new FileReader( new File( backupDirectory, BUILDS_XML ) );

        ContinuumDatabase database;
        try
        {
            database = reader.read( fileReader, strict );
        }
        catch ( XMLStreamException e )
        {
            throw new DataManagementException( e );
        }
        finally
        {
            IOUtil.close( fileReader );
        }

        // Take control of the JDO instead of using the store, and configure a new persistence factory
        // that won't generate new object IDs.
        Properties properties = new Properties();
        properties.putAll( factory.getProperties() );
        properties.setProperty( "org.jpox.metadata.jdoFileExtension", "jdorepl" );
        PersistenceManagerFactory pmf = JDOHelper.getPersistenceManagerFactory( properties );

        PlexusJdoUtils.addObject( pmf.getPersistenceManager(), database.getSystemConfiguration() );

        Map<Integer, BuildQueue> buildQueues = new HashMap<Integer, BuildQueue>();
        for ( BuildQueue buildQueue : (List<BuildQueue>)database.getBuildQueues() )
        {
            buildQueue = (BuildQueue) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), buildQueue );
            buildQueues.put( buildQueue.getId(), buildQueue );
        }

        Map<Integer, Schedule> schedules = new HashMap<Integer, Schedule>();
        for ( Iterator i = database.getSchedules().iterator(); i.hasNext(); )
        {
            Schedule schedule = (Schedule) i.next();
            schedule.setBuildQueues( getBuildQueuesBySchedule( buildQueues, schedule ) );

            schedule = (Schedule) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), schedule );
            schedules.put( Integer.valueOf( schedule.getId() ), schedule );
        }

        Map<Integer, Installation> installations = new HashMap<Integer, Installation>();
        for ( Iterator i = database.getInstallations().iterator(); i.hasNext(); )
        {
            Installation installation = (Installation) i.next();

            installation = (Installation) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), installation );
            installations.put( Integer.valueOf( installation.getInstallationId() ), installation );
        }

        Map<Integer, Profile> profiles = new HashMap<Integer, Profile>();
        for ( Iterator i = database.getProfiles().iterator(); i.hasNext(); )
        {
            Profile profile = (Profile) i.next();

            // process installations
            if ( profile.getJdk() != null )
            {
                profile.setJdk( installations.get( profile.getJdk().getInstallationId() ) );
            }
            if ( profile.getBuilder() != null )
            {
                profile.setBuilder( installations.get( profile.getBuilder().getInstallationId() ) );
            }
            List environmentVariables = new ArrayList();
            for (Iterator envIt = profile.getEnvironmentVariables().listIterator(); envIt.hasNext();){
                Installation installation = (Installation) envIt.next();
                environmentVariables.add(installations.get(installation.getInstallationId()));
                envIt.remove();
            }
            profile.setEnvironmentVariables( environmentVariables );
            profile = (Profile) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), profile );
            profiles.put( Integer.valueOf( profile.getId() ), profile );
        }

        Map<Integer, BuildDefinition> buildDefinitions = new HashMap<Integer, BuildDefinition>();
        for ( BuildDefinition buildDefinition : (List<BuildDefinition>) database.getBuildDefinitions() )
        {
            if ( buildDefinition.getSchedule() != null )
            {
                buildDefinition.setSchedule( schedules.get( Integer.valueOf( buildDefinition.getSchedule().getId() ) ) );
            }

            if ( buildDefinition.getProfile() != null )
            {
                buildDefinition.setProfile( profiles.get( Integer.valueOf( buildDefinition.getProfile().getId() ) ) );
            }

            buildDefinition = (BuildDefinition) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), buildDefinition );
            buildDefinitions.put( Integer.valueOf( buildDefinition.getId() ), buildDefinition );
        }

        Map<Integer, LocalRepository> localRepositories = new HashMap<Integer, LocalRepository>();
        for ( LocalRepository localRepository : (List<LocalRepository>) database.getLocalRepositories() )
        {
            localRepository =
                (LocalRepository) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), localRepository );
            localRepositories.put( Integer.valueOf( localRepository.getId() ), localRepository );
        }

        Map<Integer, ProjectGroup> projectGroups = new HashMap<Integer, ProjectGroup>();
        for ( Iterator i = database.getProjectGroups().iterator(); i.hasNext(); )
        {
            ProjectGroup projectGroup = (ProjectGroup) i.next();

            // first, we must map up any schedules, etc.
            projectGroup.setBuildDefinitions( processBuildDefinitions( projectGroup.getBuildDefinitions(),
                                                                       schedules, profiles, buildDefinitions ) );

            for ( Iterator j = projectGroup.getProjects().iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();

                project.setBuildDefinitions( processBuildDefinitions( project.getBuildDefinitions(),
                                                                      schedules, profiles, buildDefinitions ) );
            }

            if ( projectGroup.getLocalRepository() != null )
            {
                projectGroup.setLocalRepository( localRepositories.get(
                                                 Integer.valueOf( projectGroup.getLocalRepository().getId() ) ) );
            }

            projectGroup = (ProjectGroup) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectGroup );
            projectGroups.put( Integer.valueOf( projectGroup.getId() ), projectGroup );
        }

        // create project scm root data (CONTINUUM-2040)
        Map<Integer, ProjectScmRoot> projectScmRoots = new HashMap<Integer, ProjectScmRoot>();
        Set<Integer> keys = projectGroups.keySet();
        int id = 1;
        for( Integer key : keys )
        {
            ProjectGroup projectGroup = projectGroups.get( key );
            String url = " ";
            List<Project> projects =
                ProjectSorter.getSortedProjects( getProjectsByGroupIdWithDependencies( pmf, projectGroup.getId() ),
                                                 log );
            for ( Iterator j = projects.iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();
                if ( !project.getScmUrl().trim().startsWith( url ) )
                {
                    url = project.getScmUrl();
                    ProjectScmRoot projectScmRoot = new ProjectScmRoot();
                    projectScmRoot.setId( id );
                    projectScmRoot.setProjectGroup( projectGroup );
                    projectScmRoot.setScmRootAddress( url );
                    projectScmRoot.setState( project.getState() );

                    projectScmRoot = (ProjectScmRoot) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectScmRoot );
                    projectScmRoots.put( Integer.valueOf( projectScmRoot.getId() ), projectScmRoot );
                    id++;
                }
            }
        }

        /*
        for ( RepositoryPurgeConfiguration repoPurge : (List<RepositoryPurgeConfiguration>) database.getRepositoryPurgeConfigurations() )
        {
            repoPurge.setRepository( localRepositories.get(
                                     Integer.valueOf( repoPurge.getRepository().getId() ) ) );

            if ( repoPurge.getSchedule() != null )
            {
                repoPurge.setSchedule( schedules.get(
                                       Integer.valueOf( repoPurge.getSchedule().getId() ) ) );
            }

            repoPurge = (RepositoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), repoPurge );
        }*/

        for ( DirectoryPurgeConfiguration dirPurge : (List<DirectoryPurgeConfiguration>) database.getDirectoryPurgeConfigurations() )
        {
            if ( dirPurge.getSchedule() != null )
            {
                dirPurge.setSchedule( schedules.get(
                                      Integer.valueOf( dirPurge.getSchedule().getId() ) ) );
            }

            dirPurge = (DirectoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), dirPurge );
        }

        for ( ContinuumReleaseResult releaseResult : (List<ContinuumReleaseResult>) database.getContinuumReleaseResults() )
        {
            releaseResult.setProjectGroup( projectGroups.get(
                                           Integer.valueOf( releaseResult.getProjectGroup().getId() ) ) );

            ProjectGroup group = releaseResult.getProjectGroup();

            for ( Project project : (List<Project>) group.getProjects() )
            {
                if ( project.getId() == releaseResult.getProject().getId() )
                {
                    try
                    {
                        Project proj =
                            (Project) PlexusJdoUtils.getObjectById( pmf.getPersistenceManager(), Project.class, project.getId(), null );
                        releaseResult.setProject( proj );
                    }
                    catch ( Exception e )
                    {
                        throw new DataManagementException( e );
                    }
                }
            }

            releaseResult =
                (ContinuumReleaseResult) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), releaseResult );
        }

        for ( BuildDefinitionTemplate template : (List<BuildDefinitionTemplate>) database.getBuildDefinitionTemplates() )
        {
            template.setBuildDefinitions( processBuildDefinitions( template.getBuildDefinitions(), buildDefinitions ) );

            template =
                (BuildDefinitionTemplate) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), template );
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    protected ConfigurableJdoFactory factory;

    public void backupDatabase( File backupDirectory )
        throws IOException
    {
        ContinuumDatabase database = new ContinuumDatabase();
        try
        {
            database.setSystemConfiguration( systemConfigurationDao.getSystemConfiguration() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }

        // TODO: need these to lazy load to conserve memory while we stream out the model
        Collection projectGroups = projectGroupDao.getAllProjectGroupsWithTheLot();
        database.setProjectGroups( new ArrayList( projectGroups ) );
        try
        {
            database.setInstallations( installationDao.getAllInstallations() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }
        database.setSchedules( scheduleDao.getAllSchedulesByName() );
        database.setProfiles( profileDao.getAllProfilesByName() );

        database.setLocalRepositories( localRepositoryDao.getAllLocalRepositories() );
        database.setRepositoryPurgeConfigurations(
            repositoryPurgeConfigurationDao.getAllRepositoryPurgeConfigurations() );
        database.setDirectoryPurgeConfigurations( directoryPurgeConfigurationDao.getAllDirectoryPurgeConfigurations() );

        database.setProjectScmRoots( projectScmRootDao.getAllProjectScmRoots() );

        ContinuumStaxWriter writer = new ContinuumStaxWriter();

        File backupFile = new File( backupDirectory, BUILDS_XML );
        File parentFile = backupFile.getParentFile();
        parentFile.mkdirs();

        OutputStream out = new FileOutputStream( backupFile );
        Writer fileWriter = new OutputStreamWriter( out, Charset.forName( database.getModelEncoding() ) );

        try
        {
            writer.write( fileWriter, database );
        }
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    {
        ContinuumStaxReader reader = new ContinuumStaxReader();

        FileReader fileReader = new FileReader( new File( backupDirectory, BUILDS_XML ) );

        ContinuumDatabase database;
        try
        {
            database = reader.read( fileReader );
        }
        catch ( XMLStreamException e )
        {
            throw new DataManagementException( e );
        }
        finally
        {
            IOUtil.close( fileReader );
        }

        // Take control of the JDO instead of using the store, and configure a new persistence factory
        // that won't generate new object IDs.
        Properties properties = new Properties();
        properties.putAll( factory.getProperties() );
        properties.setProperty( "org.jpox.metadata.jdoFileExtension", "jdorepl" );
        PersistenceManagerFactory pmf = JDOHelper.getPersistenceManagerFactory( properties );

        PlexusJdoUtils.addObject( pmf.getPersistenceManager(), database.getSystemConfiguration() );

        Map<Integer, Schedule> schedules = new HashMap<Integer, Schedule>();
        for ( Iterator i = database.getSchedules().iterator(); i.hasNext(); )
        {
            Schedule schedule = (Schedule) i.next();

            schedule = (Schedule) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), schedule );
            schedules.put( Integer.valueOf( schedule.getId() ), schedule );
        }

        Map<Integer, Installation> installations = new HashMap<Integer, Installation>();
        for ( Iterator i = database.getInstallations().iterator(); i.hasNext(); )
        {
            Installation installation = (Installation) i.next();

            installation = (Installation) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), installation );
            installations.put( Integer.valueOf( installation.getInstallationId() ), installation );
        }

        Map<Integer, Profile> profiles = new HashMap<Integer, Profile>();
        for ( Iterator i = database.getProfiles().iterator(); i.hasNext(); )
        {
            Profile profile = (Profile) i.next();

            // process installations
            if ( profile.getJdk() != null )
            {
                profile.setJdk( installations.get( profile.getJdk().getInstallationId() ) );
            }
            if ( profile.getBuilder() != null )
            {
                profile.setBuilder( installations.get( profile.getBuilder().getInstallationId() ) );
            }

            profile = (Profile) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), profile );
            profiles.put( Integer.valueOf( profile.getId() ), profile );
        }

        Map<Integer, LocalRepository> localRepositories = new HashMap<Integer, LocalRepository>();
        for ( LocalRepository localRepository : (List<LocalRepository>) database.getLocalRepositories() )
        {
            localRepository =
                (LocalRepository) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), localRepository );
            localRepositories.put( Integer.valueOf( localRepository.getId() ), localRepository );
        }

        Map<Integer, ProjectGroup> projectGroups = new HashMap<Integer, ProjectGroup>();
        for ( Iterator i = database.getProjectGroups().iterator(); i.hasNext(); )
        {
            ProjectGroup projectGroup = (ProjectGroup) i.next();

            // first, we must map up any schedules, etc.
            processBuildDefinitions( projectGroup.getBuildDefinitions(), schedules, profiles, localRepositories );
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    protected ConfigurableJdoFactory factory;

    public void backupDatabase( File backupDirectory )
        throws IOException
    {
        ContinuumDatabase database = new ContinuumDatabase();
        try
        {
            database.setSystemConfiguration( systemConfigurationDao.getSystemConfiguration() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }

        // TODO: need these to lazy load to conserve memory while we stream out the model
        Collection projectGroups = projectGroupDao.getAllProjectGroupsWithTheLot();
        database.setProjectGroups( new ArrayList( projectGroups ) );
        try
        {
            database.setInstallations( installationDao.getAllInstallations() );

            database.setBuildDefinitionTemplates( buildDefinitionTemplateDao.getAllBuildDefinitionTemplate() );

            database.setBuildQueues( buildQueueDao.getAllBuildQueues() );

            database.setBuildDefinitions( buildDefinitionDao.getAllTemplates() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }
        database.setSchedules( scheduleDao.getAllSchedulesByName() );
        database.setProfiles( profileDao.getAllProfilesByName() );
        database.setLocalRepositories( localRepositoryDao.getAllLocalRepositories() );
        database.setRepositoryPurgeConfigurations(
            repositoryPurgeConfigurationDao.getAllRepositoryPurgeConfigurations() );
        database.setDirectoryPurgeConfigurations( directoryPurgeConfigurationDao.getAllDirectoryPurgeConfigurations() );
        database.setDistributedDirectoryPurgeConfigurations(
            distributedDirectoryPurgeConfigurationDao.getAllDistributedDirectoryPurgeConfigurations() );
        database.setProjectScmRoots( projectScmRootDao.getAllProjectScmRoots() );
        database.setContinuumReleaseResults( releaseResultDao.getAllContinuumReleaseResults() );

        ContinuumStaxWriter writer = new ContinuumStaxWriter();

        File backupFile = new File( backupDirectory, BUILDS_XML );
        File parentFile = backupFile.getParentFile();
        parentFile.mkdirs();

        OutputStream out = new FileOutputStream( backupFile );
        Writer fileWriter = new OutputStreamWriter( out, Charset.forName( database.getModelEncoding() ) );

        try
        {
            writer.write( fileWriter, database );
        }
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    {
        ContinuumStaxReader reader = new ContinuumStaxReader();

        FileReader fileReader = new FileReader( new File( backupDirectory, BUILDS_XML ) );

        ContinuumDatabase database;
        try
        {
            database = reader.read( fileReader, strict );
        }
        catch ( XMLStreamException e )
        {
            throw new DataManagementException( e );
        }
        finally
        {
            IOUtil.close( fileReader );
        }

        // Take control of the JDO instead of using the store, and configure a new persistence factory
        // that won't generate new object IDs.
        Properties properties = new Properties();
        properties.putAll( factory.getProperties() );
        properties.setProperty( "org.jpox.metadata.jdoFileExtension", "jdorepl" );
        PersistenceManagerFactory pmf = JDOHelper.getPersistenceManagerFactory( properties );

        PlexusJdoUtils.addObject( pmf.getPersistenceManager(), database.getSystemConfiguration() );

        Map<Integer, BuildQueue> buildQueues = new HashMap<Integer, BuildQueue>();
        for ( BuildQueue buildQueue : (List<BuildQueue>) database.getBuildQueues() )
        {
            buildQueue = (BuildQueue) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), buildQueue );
            buildQueues.put( buildQueue.getId(), buildQueue );
        }

        Map<Integer, Schedule> schedules = new HashMap<Integer, Schedule>();
        for ( Iterator i = database.getSchedules().iterator(); i.hasNext(); )
        {
            Schedule schedule = (Schedule) i.next();
            schedule.setBuildQueues( getBuildQueuesBySchedule( buildQueues, schedule ) );

            schedule = (Schedule) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), schedule );
            schedules.put( Integer.valueOf( schedule.getId() ), schedule );
        }

        Map<Integer, Installation> installations = new HashMap<Integer, Installation>();
        for ( Iterator i = database.getInstallations().iterator(); i.hasNext(); )
        {
            Installation installation = (Installation) i.next();

            installation = (Installation) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), installation );
            installations.put( Integer.valueOf( installation.getInstallationId() ), installation );
        }

        Map<Integer, Profile> profiles = new HashMap<Integer, Profile>();
        for ( Iterator i = database.getProfiles().iterator(); i.hasNext(); )
        {
            Profile profile = (Profile) i.next();

            // process installations
            if ( profile.getJdk() != null )
            {
                profile.setJdk( installations.get( profile.getJdk().getInstallationId() ) );
            }
            if ( profile.getBuilder() != null )
            {
                profile.setBuilder( installations.get( profile.getBuilder().getInstallationId() ) );
            }
            List environmentVariables = new ArrayList();
            for ( Iterator envIt = profile.getEnvironmentVariables().listIterator(); envIt.hasNext(); )
            {
                Installation installation = (Installation) envIt.next();
                environmentVariables.add( installations.get( installation.getInstallationId() ) );
                envIt.remove();
            }
            profile.setEnvironmentVariables( environmentVariables );
            profile = (Profile) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), profile );
            profiles.put( Integer.valueOf( profile.getId() ), profile );
        }

        Map<Integer, BuildDefinition> buildDefinitions = new HashMap<Integer, BuildDefinition>();
        for ( BuildDefinition buildDefinition : (List<BuildDefinition>) database.getBuildDefinitions() )
        {
            if ( buildDefinition.getSchedule() != null )
            {
                buildDefinition.setSchedule( schedules.get( Integer.valueOf(
                    buildDefinition.getSchedule().getId() ) ) );
            }

            if ( buildDefinition.getProfile() != null )
            {
                buildDefinition.setProfile( profiles.get( Integer.valueOf( buildDefinition.getProfile().getId() ) ) );
            }

            buildDefinition = (BuildDefinition) PlexusJdoUtils.addObject( pmf.getPersistenceManager(),
                                                                          buildDefinition );
            buildDefinitions.put( Integer.valueOf( buildDefinition.getId() ), buildDefinition );
        }

        Map<Integer, LocalRepository> localRepositories = new HashMap<Integer, LocalRepository>();
        for ( LocalRepository localRepository : (List<LocalRepository>) database.getLocalRepositories() )
        {
            localRepository = (LocalRepository) PlexusJdoUtils.addObject( pmf.getPersistenceManager(),
                                                                          localRepository );
            localRepositories.put( Integer.valueOf( localRepository.getId() ), localRepository );
        }

        Map<Integer, ProjectGroup> projectGroups = new HashMap<Integer, ProjectGroup>();
        for ( Iterator i = database.getProjectGroups().iterator(); i.hasNext(); )
        {
            ProjectGroup projectGroup = (ProjectGroup) i.next();

            // first, we must map up any schedules, etc.
            projectGroup.setBuildDefinitions( processBuildDefinitions( projectGroup.getBuildDefinitions(), schedules,
                                                                       profiles, buildDefinitions ) );

            for ( Iterator j = projectGroup.getProjects().iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();

                project.setBuildDefinitions( processBuildDefinitions( project.getBuildDefinitions(), schedules,
                                                                      profiles, buildDefinitions ) );
            }

            if ( projectGroup.getLocalRepository() != null )
            {
                projectGroup.setLocalRepository( localRepositories.get( Integer.valueOf(
                    projectGroup.getLocalRepository().getId() ) ) );
            }

            projectGroup = (ProjectGroup) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectGroup );
            projectGroups.put( Integer.valueOf( projectGroup.getId() ), projectGroup );
        }

        // create project scm root data (CONTINUUM-2040)
        Map<Integer, ProjectScmRoot> projectScmRoots = new HashMap<Integer, ProjectScmRoot>();
        Set<Integer> keys = projectGroups.keySet();
        int id = 1;
        for ( Integer key : keys )
        {
            ProjectGroup projectGroup = projectGroups.get( key );
            String url = " ";
            List<Project> projects = ProjectSorter.getSortedProjects( getProjectsByGroupIdWithDependencies( pmf,
                                                                                                            projectGroup.getId() ),
                                                                      log );
            for ( Iterator j = projects.iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();
                if ( !project.getScmUrl().trim().startsWith( url ) )
                {
                    url = project.getScmUrl();
                    ProjectScmRoot projectScmRoot = new ProjectScmRoot();
                    projectScmRoot.setId( id );
                    projectScmRoot.setProjectGroup( projectGroup );
                    projectScmRoot.setScmRootAddress( url );
                    projectScmRoot.setState( project.getState() );

                    projectScmRoot = (ProjectScmRoot) PlexusJdoUtils.addObject( pmf.getPersistenceManager(),
                                                                                projectScmRoot );
                    projectScmRoots.put( Integer.valueOf( projectScmRoot.getId() ), projectScmRoot );
                    id++;
                }
            }
        }

        /*
        for ( RepositoryPurgeConfiguration repoPurge : (List<RepositoryPurgeConfiguration>) database.getRepositoryPurgeConfigurations() )
        {
            repoPurge.setRepository( localRepositories.get(
                                     Integer.valueOf( repoPurge.getRepository().getId() ) ) );

            if ( repoPurge.getSchedule() != null )
            {
                repoPurge.setSchedule( schedules.get(
                                       Integer.valueOf( repoPurge.getSchedule().getId() ) ) );
            }

            repoPurge = (RepositoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), repoPurge );
        }*/

        for ( DirectoryPurgeConfiguration dirPurge : (List<DirectoryPurgeConfiguration>) database.getDirectoryPurgeConfigurations() )
        {
            if ( dirPurge.getSchedule() != null )
            {
                dirPurge.setSchedule( schedules.get( Integer.valueOf( dirPurge.getSchedule().getId() ) ) );
            }

            dirPurge = (DirectoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), dirPurge );
        }

        for ( ContinuumReleaseResult releaseResult : (List<ContinuumReleaseResult>) database.getContinuumReleaseResults() )
        {
            releaseResult.setProjectGroup( projectGroups.get( Integer.valueOf(
                releaseResult.getProjectGroup().getId() ) ) );

            ProjectGroup group = releaseResult.getProjectGroup();

            for ( Project project : (List<Project>) group.getProjects() )
            {
                if ( project.getId() == releaseResult.getProject().getId() )
                {
                    try
                    {
                        Project proj = (Project) PlexusJdoUtils.getObjectById( pmf.getPersistenceManager(),
                                                                               Project.class, project.getId(), null );
                        releaseResult.setProject( proj );
                    }
                    catch ( Exception e )
                    {
                        throw new DataManagementException( e );
                    }
                }
            }

            releaseResult = (ContinuumReleaseResult) PlexusJdoUtils.addObject( pmf.getPersistenceManager(),
                                                                               releaseResult );
        }

        for ( BuildDefinitionTemplate template : (List<BuildDefinitionTemplate>) database.getBuildDefinitionTemplates() )
        {
            template.setBuildDefinitions( processBuildDefinitions( template.getBuildDefinitions(), buildDefinitions ) );

            template = (BuildDefinitionTemplate) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), template );
        }
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    protected ConfigurableJdoFactory factory;

    public void backupDatabase( File backupDirectory )
        throws IOException
    {
        ContinuumDatabase database = new ContinuumDatabase();
        try
        {
            database.setSystemConfiguration( systemConfigurationDao.getSystemConfiguration() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }

        // TODO: need these to lazy load to conserve memory while we stream out the model
        Collection projectGroups = projectGroupDao.getAllProjectGroupsWithTheLot();
        database.setProjectGroups( new ArrayList( projectGroups ) );
        try
        {
            database.setInstallations( installationDao.getAllInstallations() );

            database.setBuildDefinitionTemplates( buildDefinitionTemplateDao.getAllBuildDefinitionTemplate() );

            database.setBuildQueues( buildQueueDao.getAllBuildQueues() );

            database.setBuildDefinitions( buildDefinitionDao.getAllTemplates() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }
        database.setSchedules( scheduleDao.getAllSchedulesByName() );
        database.setProfiles( profileDao.getAllProfilesByName() );
        database.setLocalRepositories( localRepositoryDao.getAllLocalRepositories() );
        database.setRepositoryPurgeConfigurations(
            repositoryPurgeConfigurationDao.getAllRepositoryPurgeConfigurations() );
        database.setDirectoryPurgeConfigurations( directoryPurgeConfigurationDao.getAllDirectoryPurgeConfigurations() );
        database.setProjectScmRoots( projectScmRootDao.getAllProjectScmRoots() );
        database.setContinuumReleaseResults( releaseResultDao.getAllContinuumReleaseResults() );

        ContinuumStaxWriter writer = new ContinuumStaxWriter();

        File backupFile = new File( backupDirectory, BUILDS_XML );
        File parentFile = backupFile.getParentFile();
        parentFile.mkdirs();

        OutputStream out = new FileOutputStream( backupFile );
        Writer fileWriter = new OutputStreamWriter( out, Charset.forName( database.getModelEncoding() ) );

        try
        {
            writer.write( fileWriter, database );
        }
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    {
        ContinuumStaxReader reader = new ContinuumStaxReader();

        FileReader fileReader = new FileReader( new File( backupDirectory, BUILDS_XML ) );

        ContinuumDatabase database;
        try
        {
            database = reader.read( fileReader );
        }
        catch ( XMLStreamException e )
        {
            throw new DataManagementException( e );
        }
        finally
        {
            IOUtil.close( fileReader );
        }

        // Take control of the JDO instead of using the store, and configure a new persistence factory
        // that won't generate new object IDs.
        Properties properties = new Properties();
        properties.putAll( factory.getProperties() );
        properties.setProperty( "org.jpox.metadata.jdoFileExtension", "jdorepl" );
        PersistenceManagerFactory pmf = JDOHelper.getPersistenceManagerFactory( properties );

        PlexusJdoUtils.addObject( pmf.getPersistenceManager(), database.getSystemConfiguration() );

        Map<Integer, BuildQueue> buildQueues = new HashMap<Integer, BuildQueue>();
        for ( BuildQueue buildQueue : (List<BuildQueue>)database.getBuildQueues() )
        {
            buildQueue = (BuildQueue) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), buildQueue );
            buildQueues.put( buildQueue.getId(), buildQueue );
        }

        Map<Integer, Schedule> schedules = new HashMap<Integer, Schedule>();
        for ( Iterator i = database.getSchedules().iterator(); i.hasNext(); )
        {
            Schedule schedule = (Schedule) i.next();
            schedule.setBuildQueues( getBuildQueuesBySchedule( buildQueues, schedule ) );

            schedule = (Schedule) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), schedule );
            schedules.put( Integer.valueOf( schedule.getId() ), schedule );
        }

        Map<Integer, Installation> installations = new HashMap<Integer, Installation>();
        for ( Iterator i = database.getInstallations().iterator(); i.hasNext(); )
        {
            Installation installation = (Installation) i.next();

            installation = (Installation) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), installation );
            installations.put( Integer.valueOf( installation.getInstallationId() ), installation );
        }

        Map<Integer, Profile> profiles = new HashMap<Integer, Profile>();
        for ( Iterator i = database.getProfiles().iterator(); i.hasNext(); )
        {
            Profile profile = (Profile) i.next();

            // process installations
            if ( profile.getJdk() != null )
            {
                profile.setJdk( installations.get( profile.getJdk().getInstallationId() ) );
            }
            if ( profile.getBuilder() != null )
            {
                profile.setBuilder( installations.get( profile.getBuilder().getInstallationId() ) );
            }
            List environmentVariables = new ArrayList();
            for (Iterator envIt = profile.getEnvironmentVariables().listIterator(); envIt.hasNext();){
                Installation installation = (Installation) envIt.next();
                environmentVariables.add(installations.get(installation.getInstallationId()));
                envIt.remove();
            }
            profile.setEnvironmentVariables( environmentVariables );
            profile = (Profile) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), profile );
            profiles.put( Integer.valueOf( profile.getId() ), profile );
        }

        Map<Integer, BuildDefinition> buildDefinitions = new HashMap<Integer, BuildDefinition>();
        for ( BuildDefinition buildDefinition : (List<BuildDefinition>) database.getBuildDefinitions() )
        {
            if ( buildDefinition.getSchedule() != null )
            {
                buildDefinition.setSchedule( schedules.get( Integer.valueOf( buildDefinition.getSchedule().getId() ) ) );
            }

            if ( buildDefinition.getProfile() != null )
            {
                buildDefinition.setProfile( profiles.get( Integer.valueOf( buildDefinition.getProfile().getId() ) ) );
            }

            buildDefinition = (BuildDefinition) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), buildDefinition );
            buildDefinitions.put( Integer.valueOf( buildDefinition.getId() ), buildDefinition );
        }

        Map<Integer, LocalRepository> localRepositories = new HashMap<Integer, LocalRepository>();
        for ( LocalRepository localRepository : (List<LocalRepository>) database.getLocalRepositories() )
        {
            localRepository =
                (LocalRepository) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), localRepository );
            localRepositories.put( Integer.valueOf( localRepository.getId() ), localRepository );
        }

        Map<Integer, ProjectGroup> projectGroups = new HashMap<Integer, ProjectGroup>();
        for ( Iterator i = database.getProjectGroups().iterator(); i.hasNext(); )
        {
            ProjectGroup projectGroup = (ProjectGroup) i.next();

            // first, we must map up any schedules, etc.
            projectGroup.setBuildDefinitions( processBuildDefinitions( projectGroup.getBuildDefinitions(),
                                                                       schedules, profiles, buildDefinitions ) );

            for ( Iterator j = projectGroup.getProjects().iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();

                project.setBuildDefinitions( processBuildDefinitions( project.getBuildDefinitions(),
                                                                      schedules, profiles, buildDefinitions ) );
            }

            if ( projectGroup.getLocalRepository() != null )
            {
                projectGroup.setLocalRepository( localRepositories.get(
                                                 Integer.valueOf( projectGroup.getLocalRepository().getId() ) ) );
            }

            projectGroup = (ProjectGroup) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectGroup );
            projectGroups.put( Integer.valueOf( projectGroup.getId() ), projectGroup );
        }

        // create project scm root data (CONTINUUM-2040)
        Map<Integer, ProjectScmRoot> projectScmRoots = new HashMap<Integer, ProjectScmRoot>();
        Set<Integer> keys = projectGroups.keySet();
        int id = 1;
        for( Integer key : keys )
        {
            ProjectGroup projectGroup = projectGroups.get( key );
            String url = " ";
            List<Project> projects =
                ProjectSorter.getSortedProjects( getProjectsByGroupIdWithDependencies( pmf, projectGroup.getId() ),
                                                 log );
            for ( Iterator j = projects.iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();
                if ( !project.getScmUrl().trim().startsWith( url ) )
                {
                    url = project.getScmUrl();
                    ProjectScmRoot projectScmRoot = new ProjectScmRoot();
                    projectScmRoot.setId( id );
                    projectScmRoot.setProjectGroup( projectGroup );
                    projectScmRoot.setScmRootAddress( url );
                    projectScmRoot.setState( project.getState() );

                    projectScmRoot = (ProjectScmRoot) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectScmRoot );
                    projectScmRoots.put( Integer.valueOf( projectScmRoot.getId() ), projectScmRoot );
                    id++;
                }
            }
        }

        /*
        for ( RepositoryPurgeConfiguration repoPurge : (List<RepositoryPurgeConfiguration>) database.getRepositoryPurgeConfigurations() )
        {
            repoPurge.setRepository( localRepositories.get(
                                     Integer.valueOf( repoPurge.getRepository().getId() ) ) );

            if ( repoPurge.getSchedule() != null )
            {
                repoPurge.setSchedule( schedules.get(
                                       Integer.valueOf( repoPurge.getSchedule().getId() ) ) );
            }

            repoPurge = (RepositoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), repoPurge );
        }*/

        for ( DirectoryPurgeConfiguration dirPurge : (List<DirectoryPurgeConfiguration>) database.getDirectoryPurgeConfigurations() )
        {
            if ( dirPurge.getSchedule() != null )
            {
                dirPurge.setSchedule( schedules.get(
                                      Integer.valueOf( dirPurge.getSchedule().getId() ) ) );
            }

            dirPurge = (DirectoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), dirPurge );
        }

        for ( ContinuumReleaseResult releaseResult : (List<ContinuumReleaseResult>) database.getContinuumReleaseResults() )
        {
            releaseResult.setProjectGroup( projectGroups.get(
                                           Integer.valueOf( releaseResult.getProjectGroup().getId() ) ) );

            ProjectGroup group = releaseResult.getProjectGroup();

            for ( Project project : (List<Project>) group.getProjects() )
            {
                if ( project.getId() == releaseResult.getProject().getId() )
                {
                    try
                    {
                        Project proj =
                            (Project) PlexusJdoUtils.getObjectById( pmf.getPersistenceManager(), Project.class, project.getId(), null );
                        releaseResult.setProject( proj );
                    }
                    catch ( Exception e )
                    {
                        throw new DataManagementException( e );
                    }
                }
            }

            releaseResult =
                (ContinuumReleaseResult) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), releaseResult );
        }

        for ( BuildDefinitionTemplate template : (List<BuildDefinitionTemplate>) database.getBuildDefinitionTemplates() )
        {
            template.setBuildDefinitions( processBuildDefinitions( template.getBuildDefinitions(), buildDefinitions ) );

            template =
                (BuildDefinitionTemplate) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), template );
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    protected ConfigurableJdoFactory factory;

    public void backupDatabase( File backupDirectory )
        throws IOException
    {
        ContinuumDatabase database = new ContinuumDatabase();
        try
        {
            database.setSystemConfiguration( systemConfigurationDao.getSystemConfiguration() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }

        // TODO: need these to lazy load to conserve memory while we stream out the model
        Collection projectGroups = projectGroupDao.getAllProjectGroupsWithTheLot();
        database.setProjectGroups( new ArrayList( projectGroups ) );
        try
        {
            database.setInstallations( installationDao.getAllInstallations() );
        }
        catch ( ContinuumStoreException e )
        {
            throw new DataManagementException( e );
        }
        database.setSchedules( scheduleDao.getAllSchedulesByName() );
        database.setProfiles( profileDao.getAllProfilesByName() );

        database.setLocalRepositories( localRepositoryDao.getAllLocalRepositories() );
        database.setRepositoryPurgeConfigurations(
            repositoryPurgeConfigurationDao.getAllRepositoryPurgeConfigurations() );
        database.setDirectoryPurgeConfigurations( directoryPurgeConfigurationDao.getAllDirectoryPurgeConfigurations() );

        database.setProjectScmRoots( projectScmRootDao.getAllProjectScmRoots() );
        try
        {
            database.setBuildDefinitionTemplates( buildDefinitionTemplateDao.getAllBuildDefinitionTemplate() );
        }
        catch ( ContinuumStoreException e )
        {
        }

        database.setContinuumReleaseResults( releaseResultDao.getAllContinuumReleaseResults() );

        ContinuumStaxWriter writer = new ContinuumStaxWriter();

        File backupFile = new File( backupDirectory, BUILDS_XML );
        File parentFile = backupFile.getParentFile();
        parentFile.mkdirs();

        OutputStream out = new FileOutputStream( backupFile );
        Writer fileWriter = new OutputStreamWriter( out, Charset.forName( database.getModelEncoding() ) );

        try
        {
            writer.write( fileWriter, database );
        }
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    {
        ContinuumStaxReader reader = new ContinuumStaxReader();

        FileReader fileReader = new FileReader( new File( backupDirectory, BUILDS_XML ) );

        ContinuumDatabase database;
        try
        {
            database = reader.read( fileReader );
        }
        catch ( XMLStreamException e )
        {
            throw new DataManagementException( e );
        }
        finally
        {
            IOUtil.close( fileReader );
        }

        // Take control of the JDO instead of using the store, and configure a new persistence factory
        // that won't generate new object IDs.
        Properties properties = new Properties();
        properties.putAll( factory.getProperties() );
        properties.setProperty( "org.jpox.metadata.jdoFileExtension", "jdorepl" );
        PersistenceManagerFactory pmf = JDOHelper.getPersistenceManagerFactory( properties );

        PlexusJdoUtils.addObject( pmf.getPersistenceManager(), database.getSystemConfiguration() );

        Map<Integer, Schedule> schedules = new HashMap<Integer, Schedule>();
        for ( Iterator i = database.getSchedules().iterator(); i.hasNext(); )
        {
            Schedule schedule = (Schedule) i.next();

            schedule = (Schedule) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), schedule );
            schedules.put( Integer.valueOf( schedule.getId() ), schedule );
        }

        Map<Integer, Installation> installations = new HashMap<Integer, Installation>();
        for ( Iterator i = database.getInstallations().iterator(); i.hasNext(); )
        {
            Installation installation = (Installation) i.next();

            installation = (Installation) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), installation );
            installations.put( Integer.valueOf( installation.getInstallationId() ), installation );
        }

        Map<Integer, Profile> profiles = new HashMap<Integer, Profile>();
        for ( Iterator i = database.getProfiles().iterator(); i.hasNext(); )
        {
            Profile profile = (Profile) i.next();

            // process installations
            if ( profile.getJdk() != null )
            {
                profile.setJdk( installations.get( profile.getJdk().getInstallationId() ) );
            }
            if ( profile.getBuilder() != null )
            {
                profile.setBuilder( installations.get( profile.getBuilder().getInstallationId() ) );
            }

            profile = (Profile) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), profile );
            profiles.put( Integer.valueOf( profile.getId() ), profile );
        }

        Map<Integer, LocalRepository> localRepositories = new HashMap<Integer, LocalRepository>();
        for ( LocalRepository localRepository : (List<LocalRepository>) database.getLocalRepositories() )
        {
            localRepository =
                (LocalRepository) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), localRepository );
            localRepositories.put( Integer.valueOf( localRepository.getId() ), localRepository );
        }

        Map<Integer, ProjectGroup> projectGroups = new HashMap<Integer, ProjectGroup>();
        for ( Iterator i = database.getProjectGroups().iterator(); i.hasNext(); )
        {
            ProjectGroup projectGroup = (ProjectGroup) i.next();

            // first, we must map up any schedules, etc.
            processBuildDefinitions( projectGroup.getBuildDefinitions(), schedules, profiles, localRepositories );

            for ( Iterator j = projectGroup.getProjects().iterator(); j.hasNext(); )
            {
                Project project = (Project) j.next();

                processBuildDefinitions( project.getBuildDefinitions(), schedules, profiles, localRepositories );
            }
           
            if ( projectGroup.getLocalRepository() != null )
            {
                projectGroup.setLocalRepository( localRepositories.get(
                                                 Integer.valueOf( projectGroup.getLocalRepository().getId() ) ) );
            }
           
            projectGroup = (ProjectGroup) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectGroup );
            projectGroups.put( Integer.valueOf( projectGroup.getId() ), projectGroup );
        }
       
        // create project scm root data (CONTINUUM-2040)
        Map<Integer, ProjectScmRoot> projectScmRoots = new HashMap<Integer, ProjectScmRoot>();
        Set<Integer> keys = projectGroups.keySet();
        int id = 1;
        for( Integer key : keys )
        {
            ProjectGroup projectGroup = projectGroups.get( key );           
            String url = " ";
            try
            {                  
                List<Project> projects =
                    ProjectSorter.getSortedProjects( getProjectsByGroupIdWithDependencies( pmf, projectGroup.getId() ),
                                                     log );
                for ( Iterator j = projects.iterator(); j.hasNext(); )
                {
                    Project project = (Project) j.next();
                    if ( !project.getScmUrl().trim().startsWith( url ) )
                    {
                        url = project.getScmUrl();
                        ProjectScmRoot projectScmRoot = new ProjectScmRoot();
                        projectScmRoot.setId( id );                       
                        projectScmRoot.setProjectGroup( projectGroup );
                        projectScmRoot.setScmRootAddress( url );
                        projectScmRoot.setState( project.getState() );
                       
                        projectScmRoot = (ProjectScmRoot) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), projectScmRoot );                       
                        projectScmRoots.put( Integer.valueOf( projectScmRoot.getId() ), projectScmRoot );
                        id++;                                               
                    }
                }
            }
            catch ( CycleDetectedException e )
            {
                //skip
                log.info( "Skipping group '" + projectGroup.getGroupId() +
                    "' when creating ProjectScmRoot data. Cycle detected: " + e.getMessage() );
                continue;
            }
        }

        /*
        for ( RepositoryPurgeConfiguration repoPurge : (List<RepositoryPurgeConfiguration>) database.getRepositoryPurgeConfigurations() )
        {
            repoPurge.setRepository( localRepositories.get(
                                     Integer.valueOf( repoPurge.getRepository().getId() ) ) );

            if ( repoPurge.getSchedule() != null )
            {
                repoPurge.setSchedule( schedules.get(
                                       Integer.valueOf( repoPurge.getSchedule().getId() ) ) );
            }

            repoPurge = (RepositoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), repoPurge );
        }*/

        for ( DirectoryPurgeConfiguration dirPurge : (List<DirectoryPurgeConfiguration>) database.getDirectoryPurgeConfigurations() )
        {
            if ( dirPurge.getSchedule() != null )
            {
                dirPurge.setSchedule( schedules.get(
                                      Integer.valueOf( dirPurge.getSchedule().getId() ) ) );
            }

            dirPurge = (DirectoryPurgeConfiguration) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), dirPurge );
        }

        for ( ContinuumReleaseResult releaseResult : (List<ContinuumReleaseResult>) database.getContinuumReleaseResults() )
        {
            releaseResult.setProjectGroup( projectGroups.get(
                                           Integer.valueOf( releaseResult.getProjectGroup().getId() ) ) );

            releaseResult =
                (ContinuumReleaseResult) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), releaseResult );
        }

        for ( BuildDefinitionTemplate template : (List<BuildDefinitionTemplate>) database.getBuildDefinitionTemplates() )
        {
            template =
                (BuildDefinitionTemplate) PlexusJdoUtils.addObject( pmf.getPersistenceManager(), template );
        }
    }
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