List<Integer> patientSets = options.getPatients().getList();
List<Integer> trainItems = THYMEData.getTrainPatientSets(patientSets);
List<Integer> devItems = THYMEData.getDevPatientSets(patientSets);
List<Integer> testItems = THYMEData.getTestPatientSets(patientSets);
File workingDir = new File("target/eval/temporal-relations/event-event/");
ParameterSettings params = defaultParams;
EvaluationOfEventEventRelations evaluation = new EvaluationOfEventEventRelations(
workingDir,
options.getRawTextDirectory(),
options.getXMLDirectory(),
options.getXMLFormat(),