Package org.apache.ctakes.drugner.fsm.output.elements

Examples of org.apache.ctakes.drugner.fsm.output.elements.RouteToken

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      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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            tokenStartIndex++;
          }
          BaseToken startToken = (BaseToken) tokens
              .get(tokenStartIndex);
          BaseToken endToken = token;
          RouteToken segmentToken = null;
         
          if (fsm.equals(iv_PatchesMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TRANSDERMAL);
          }
          else if (fsm.equals(iv_GastricMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.GASTRIC);
          }
          else if (fsm.equals(iv_TopicalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TOPICAL);
          }
          else if (fsm.equals(iv_OralMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.ORAL);
          }
          else if (fsm.equals(iv_RectalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.RECTAL);
          }
          else if (fsm.equals(iv_InjectMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.INTRAVENOUS);
          }
          rangeSet.add(segmentToken);
          fsm.reset();
        }
      }
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            tokenStartIndex++;
          }
          BaseToken startToken = (BaseToken) tokens
              .get(tokenStartIndex);
          BaseToken endToken = token;
          RouteToken segmentToken = null;
         
          if (fsm.equals(iv_PatchesMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TRANSDERMAL);
          }
          else if (fsm.equals(iv_GastricMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.GASTRIC);
          }
          else if (fsm.equals(iv_TopicalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TOPICAL);
          }
          else if (fsm.equals(iv_OralMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.ORAL);
          }
          else if (fsm.equals(iv_RectalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.RECTAL);
          }
          else if (fsm.equals(iv_InjectMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.INTRAVENOUS);
          }
         
          fractionSet.add(segmentToken);
          fsm.reset();
        }
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      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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            tokenStartIndex++;
          }
          BaseToken startToken = (BaseToken) tokens
              .get(tokenStartIndex);
          BaseToken endToken = token;
          RouteToken segmentToken = null;
         
          if (fsm.equals(iv_PatchesMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TRANSDERMAL);
          }
          else if (fsm.equals(iv_GastricMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.GASTRIC);
          }
          else if (fsm.equals(iv_TopicalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TOPICAL);
          }
          else if (fsm.equals(iv_OralMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.ORAL);
          }
          else if (fsm.equals(iv_RectalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.RECTAL);
          }
          else if (fsm.equals(iv_InjectMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.INTRAVENOUS);
          }
          rangeSet.add(segmentToken);
          fsm.reset();
        }
      }
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            tokenStartIndex++;
          }
          BaseToken startToken = (BaseToken) tokens
              .get(tokenStartIndex);
          BaseToken endToken = token;
          RouteToken segmentToken = null;
         
          if (fsm.equals(iv_PatchesMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TRANSDERMAL);
          }
          else if (fsm.equals(iv_GastricMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.GASTRIC);
          }
          else if (fsm.equals(iv_TopicalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.TOPICAL);
          }
          else if (fsm.equals(iv_OralMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.ORAL);
          }
          else if (fsm.equals(iv_RectalMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.RECTAL);
          }
          else if (fsm.equals(iv_InjectMachine)){
            segmentToken = new RouteToken(
                startToken.getStartOffset(), endToken
                    .getEndOffset());
            segmentToken.setFormMethod(RouteToken.INTRAVENOUS);
          }
         
          fractionSet.add(segmentToken);
          fsm.reset();
        }
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Related Classes of org.apache.ctakes.drugner.fsm.output.elements.RouteToken

  • org.apache.ctakes.drugner.ae.DrugMentionAnnotator
  • org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
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