Package org.apache.ctakes.drugner.fsm.output.elements

Examples of org.apache.ctakes.drugner.fsm.output.elements.DosageToken

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      boolean foundDosage = false;
      int begSegDose = 0, endSegDose = 0;

      while (dosTokenItr.hasNext())
      {
        DosageToken mt = (DosageToken) dosTokenItr.next();
        begSegDose = mt.getStartOffset();
        endSegDose = mt.getEndOffset();
        DosagesAnnotation ma = new DosagesAnnotation(jcas, begSegDose,
            endSegDose);

        ma.addToIndexes();

      }
      Set suffixTokenSet = iv_suffixFSM.execute(baseTokenList, strengthTokenSet);

      Iterator suffixTokenItr = suffixTokenSet.iterator();
      while (suffixTokenItr.hasNext())
      {
        SuffixStrengthToken mt = (SuffixStrengthToken) suffixTokenItr.next();
        SuffixStrengthAnnotation ma = new SuffixStrengthAnnotation(jcas, mt.getStartOffset(), mt.getEndOffset());
        ma.addToIndexes();
      }
      // This needs to be handled differently. But since I'm not sure if this feature will be utilized
      // I am going to leave 'as is' for now.

      Set routeTokenSet = iv_routeFSM.execute(baseTokenList);
      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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      boolean foundDosage = false;
      int begSegDose = 0, endSegDose = 0;

      while (dosTokenItr.hasNext())
      {
        DosageToken mt = (DosageToken) dosTokenItr.next();
        begSegDose = mt.getStartOffset();
        endSegDose = mt.getEndOffset();
        DosagesAnnotation ma = new DosagesAnnotation(jcas, begSegDose,
            endSegDose);

        ma.addToIndexes();

      }
      Set suffixTokenSet = iv_suffixFSM.execute(baseTokenList, strengthTokenSet);

      Iterator suffixTokenItr = suffixTokenSet.iterator();
      while (suffixTokenItr.hasNext())
      {
        SuffixStrengthToken mt = (SuffixStrengthToken) suffixTokenItr.next();
        SuffixStrengthAnnotation ma = new SuffixStrengthAnnotation(jcas, mt.getStartOffset(), mt.getEndOffset());
        ma.addToIndexes();
      }
      // This needs to be handled differently. But since I'm not sure if this feature will be utilized
      // I am going to leave 'as is' for now.

      Set routeTokenSet = iv_routeFSM.execute(baseTokenList);
      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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      boolean foundDosage = false;
      int begSegDose = 0, endSegDose = 0;

      while (dosTokenItr.hasNext())
      {
        DosageToken mt = (DosageToken) dosTokenItr.next();
        begSegDose = mt.getStartOffset();
        endSegDose = mt.getEndOffset();
        DosagesAnnotation ma = new DosagesAnnotation(jcas, begSegDose,
            endSegDose);

        ma.addToIndexes();

      }
      Set suffixTokenSet = iv_suffixFSM.execute(baseTokenList, strengthTokenSet);

      Iterator suffixTokenItr = suffixTokenSet.iterator();
      while (suffixTokenItr.hasNext())
      {
        SuffixStrengthToken mt = (SuffixStrengthToken) suffixTokenItr.next();
        SuffixStrengthAnnotation ma = new SuffixStrengthAnnotation(jcas, mt.getStartOffset(), mt.getEndOffset());
        ma.addToIndexes();
      }
      // This needs to be handled differently. But since I'm not sure if this feature will be utilized
      // I am going to leave 'as is' for now.

      Set routeTokenSet = iv_routeFSM.execute(baseTokenList);
      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
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              endToken = (BaseToken) tokens.get(i - 2);
            }
          } else {
            endToken = token;
          }
          DosageToken measurementToken = new DosageToken(startToken
              .getStartOffset(), endToken.getEndOffset());
          measurementSet.add(measurementToken);
          fsm.reset();
        }
      }
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            }
          } else {
            endToken = token;
          }
          // BaseToken endToken = token;
          DosageToken measurementToken = new DosageToken(startToken
              .getStartOffset(), endToken.getEndOffset());

          measurementSet.add(measurementToken);
          fsm.reset();
        }
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      boolean foundDosage = false;
      int begSegDose = 0, endSegDose = 0;

      while (dosTokenItr.hasNext())
      {
        DosageToken mt = (DosageToken) dosTokenItr.next();
        begSegDose = mt.getStartOffset();
        endSegDose = mt.getEndOffset();
        DosagesAnnotation ma = new DosagesAnnotation(jcas, begSegDose,
            endSegDose);

        ma.addToIndexes();

      }
      Set suffixTokenSet = iv_suffixFSM.execute(baseTokenList, strengthTokenSet);

      Iterator suffixTokenItr = suffixTokenSet.iterator();
      while (suffixTokenItr.hasNext())
      {
        SuffixStrengthToken mt = (SuffixStrengthToken) suffixTokenItr.next();
        SuffixStrengthAnnotation ma = new SuffixStrengthAnnotation(jcas, mt.getStartOffset(), mt.getEndOffset());
        ma.addToIndexes();
      }
      // This needs to be handled differently. But since I'm not sure if this feature will be utilized
      // I am going to leave 'as is' for now.

      Set routeTokenSet = iv_routeFSM.execute(baseTokenList);
      boolean foundRoute = false;
      Iterator routeTokenItr = routeTokenSet.iterator();
      int begSegRT = 0, endSegRT = 0;
      while (routeTokenItr.hasNext())
      {
        RouteToken mt = (RouteToken) routeTokenItr.next();
        begSegRT = mt.getStartOffset();
        endSegRT = mt.getEndOffset();
        RouteAnnotation ma = new RouteAnnotation(jcas, begSegRT, endSegRT);
        ma.setIntakeMethod(new Integer(mt.getFormMethod()).toString());
        ma.addToIndexes();

      }

      Set frequencyUnitTokenSet = iv_frequencyUnitFSM.execute(baseTokenList);
View Full Code Here
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Related Classes of org.apache.ctakes.drugner.fsm.output.elements.DosageToken

  • org.apache.ctakes.drugner.ae.DrugMentionAnnotator
  • org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
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