Package org.apache.ctakes.core.knowtator

Examples of org.apache.ctakes.core.knowtator.KnowtatorXMLParser

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  public void process(JCas jCas) throws AnalysisEngineProcessException {
    // determine Knowtator XML file from the CAS
    URI knowtatorXML = this.getKnowtatorXML(jCas);

    // parse the Knowtator XML file into annotation objects
    KnowtatorXMLParser parser = new KnowtatorXMLParser(this.getAnnotatorNames());
    Collection<KnowtatorAnnotation> annotations;
    try {
      annotations = parser.parse(knowtatorXML);
    } catch (JDOMException e) {
      throw new AnalysisEngineProcessException(e);
    } catch (IOException e) {
      throw new AnalysisEngineProcessException(e);
    }
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      LOGGER.fatal("no such Knowtator XML file " + knowtatorURI);
      return;
    }

    // parse the Knowtator XML file into annotation objects
    KnowtatorXMLParser parser = new KnowtatorXMLParser(this.getAnnotatorNames());
    Collection<KnowtatorAnnotation> annotations;
    try {
      annotations = parser.parse(knowtatorURI);
    } catch (JDOMException e) {
      throw new AnalysisEngineProcessException(e);
    } catch (IOException e) {
      throw new AnalysisEngineProcessException(e);
    }
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      LOGGER.warn("near-FATAL: no such Knowtator XML file " + knowtatorURI);
      return;
    }

    // parse the Knowtator XML file into annotation objects
    KnowtatorXMLParser parser = new KnowtatorXMLParser(this.getAnnotatorNames());
    Collection<KnowtatorAnnotation> annotations;
    try {
      annotations = parser.parse(knowtatorURI);
    } catch (JDOMException e) {
      throw new AnalysisEngineProcessException(e);
    } catch (IOException e) {
      throw new AnalysisEngineProcessException(e);
    }
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      LOGGER.fatal("no such Knowtator XML file " + knowtatorURI);
      return;
    }

    // parse the Knowtator XML file into annotation objects
    KnowtatorXMLParser parser = new KnowtatorXMLParser(this.getAnnotatorNames());
    Collection<KnowtatorAnnotation> annotations;
    try {
      annotations = parser.parse(knowtatorURI);
    } catch (JDOMException e) {
      throw new AnalysisEngineProcessException(e);
    } catch (IOException e) {
      throw new AnalysisEngineProcessException(e);
    }
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Related Classes of org.apache.ctakes.core.knowtator.KnowtatorXMLParser

  • org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
  • org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
  • org.jdom2.Element
  • org.jdom2.input.SAXBuilder
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