Package org.apache.airavata.model.appcatalog.appinterface

Examples of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription

111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
        //Define application module
        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.0.0", "Local host echo applications");
        module.setAppModuleId(client.registerApplicationModule(module));

        //Define application interfaces
        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho0");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "Echo Input Data", null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        //Define application deployment
        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "Local echo app depoyment");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));

        //Define gateway profile
        ComputeResourcePreference computeResourcePreference = DocumentCreatorUtils.createComputeResourcePreference(
                host.getComputeResourceId(), "/tmp", null,
                false, null,
                null, null);
        gatewayResourceProfile = new GatewayResourceProfile();
//    gatewayResourceProfile.setGatewayID("default");
        gatewayResourceProfile.setGatewayName(ClientSettings.getSetting("gateway_id", "php_reference_gateway"));
        gatewayResourceProfile.addToComputeResourcePreferences(computeResourcePreference);
        String gatewayId = client.registerGatewayResourceProfile(gatewayResourceProfile);
        gatewayResourceProfile.setGatewayID(gatewayId);
        client.addGatewayComputeResourcePreference(gatewayResourceProfile.getGatewayID(), host.getComputeResourceId(), computeResourcePreference);
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
        ;

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "SSHEchoApplication");
        client.registerApplicationDeployment(deployment);

        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SSHEcho1");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        client.registerApplicationInterface(application);
        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/tmp", null, false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);

        ApplicationModule module1 = DocumentCreatorUtils.createApplicationModule("echo", "1.2", null);
        module1.setAppModuleId(client.registerApplicationModule(module1));

        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho2");
        application.addToApplicationModules(module1.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "echo_input", null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));

        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module1.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "Echo application");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));

        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));

        ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
        module2.setAppModuleId(client.registerApplicationModule(module2));
        ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
//      application2.setIsEmpty(false);
        application2.setApplicationName("WRF");
        application2.addToApplicationModules(module2.getAppModuleId());
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));

        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
        application2.setApplicationInterfaceId(client.registerApplicationInterface(application2));

        ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
        deployment2.setAppDeploymentId(client.registerApplicationDeployment(deployment2));
        return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();
    }
View Full Code Here
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));

        ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
        module2.setAppModuleId(client.registerApplicationModule(module2));
        ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
        //      application2.setIsEmpty(false);
        application2.setApplicationName("WRF");
        application2.addToApplicationModules(module2.getAppModuleId());
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));

        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
        application2.setApplicationInterfaceId(client.registerApplicationInterface(application2));

        ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
        deployment2.setAppDeploymentId(client.registerApplicationDeployment(deployment2));
        return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();

    }
View Full Code Here
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);

        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.3", null);
        module.setAppModuleId(client.registerApplicationModule(module));

        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho3");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));

        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);

        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.4", null);
        module.setAppModuleId(client.registerApplicationModule(module));

        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho4");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));

        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);

        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.5", null);
        module.setAppModuleId(client.registerApplicationModule(module));

        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
        application.setApplicationName("SimpleEchoBR");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/N/u/lginnali/BigRed2/myjob/test.sh", ApplicationParallelismType.SERIAL, "EchoLocal");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));

        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");
        date = date.replaceAll(":", "_");
        String tempDir = "/N/u/lginnali/BigRed2/myjob";
        tempDir = tempDir + File.separator + "SimpleEcho" + "_" + date + "_" + UUID.randomUUID();

        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), tempDir, "TG-STA110014S", false, null, null, null));


        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
        amodule.setAppModuleId(client.registerApplicationModule(amodule));


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
        application.setApplicationName("AmberBR2");
        application.addToApplicationModules(amodule.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/N/u/cgateway/BigRed2/sandbox/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberBR2");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");
        date = date.replaceAll(":", "_");
        String tempDir = "/N/u/cgateway/BigRed2/sandbox/jobs";
        tempDir = tempDir + File.separator +
                "Amber";

        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), tempDir, null, false, null, null, null));


        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }
View Full Code Here
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
        amodule.setAppModuleId(client.registerApplicationModule(amodule));


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
        application.setApplicationName("AmberBR2");
        application.addToApplicationModules(amodule.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));

        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberStampede");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));

        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));


        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();

    }
View Full Code Here
TOP

Related Classes of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription

  • org.apache.aiaravata.application.catalog.data.util.AppCatalogThriftConversion
  • org.apache.airavata.api.server.handler.AiravataServerHandler
  • org.apache.airavata.app.catalog.test.AppInterfaceTest
  • org.apache.airavata.client.tools.DocumentCreatorNew
  • org.apache.airavata.client.tools.RegisterSampleApplicationsUtils
  • org.apache.airavata.gfac.core.cpi.BetterGfacImpl
  • org.apache.airavata.model.util.AppInterfaceUtil
  • org.apache.airavata.orchestrator.server.OrchestratorServerHandler
  • org.apache.thrift.protocol.TTupleProtocol
  • java.util.BitSet
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.