Examples of org.apache.airavata.gsi.ssh.impl.RawCommandInfo

Package org.apache.airavata.gsi.ssh.impl

Examples of org.apache.airavata.gsi.ssh.impl.RawCommandInfo

org.apache.airavata.gsi.ssh.impl.RawCommandInfo
The raw command information. String returned by getCommand is directly executed in SSH shell. E.g :- getCommand return string set for rawCommand - "/opt/torque/bin/qsub /home/ogce/test.pbs".

                 */
                String execuable = app.getStaticWorkingDirectory() + File.separatorChar + Constants.EXECUTABLE_NAME;
                details.setJobDescription(execuable);


//                GFacUtils.updateJobStatus(details, JobState.SUBMITTED);
                RawCommandInfo rawCommandInfo = new RawCommandInfo("/bin/chmod 755 " + execuable + "; " + execuable);


                StandardOutReader jobIDReaderCommandOutput = new StandardOutReader();


                CommandExecutor.executeCommand(rawCommandInfo, cluster.getSession(), jobIDReaderCommandOutput);
                String stdOutputString = getOutputifAvailable(jobIDReaderCommandOutput, "Error submitting job to resource");

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            this.installedPath = installedPath + "/";
        }
    }


    public RawCommandInfo getCancelCommand(String jobID) {
        return new RawCommandInfo(this.installedPath + "qdel " + jobID);
    }

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    public void setJobDescriptionTemplateName(String jobDescriptionTemplateName) {
        this.jobDescriptionTemplateName = jobDescriptionTemplateName;
    }


    public RawCommandInfo getMonitorCommand(String jobID) {
        return new RawCommandInfo(this.installedPath + "qstat -f " + jobID);
    }

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    public String getScriptExtension() {
        return scriptExtension;
    }


    public RawCommandInfo getSubmitCommand(String workingDirectory, String pbsFilePath) {
        return new RawCommandInfo(this.installedPath + "qsub " +
                workingDirectory + File.separator + FilenameUtils.getName(pbsFilePath));
    }

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    public void setParser(OutputParser parser) {
        this.parser = parser;
    }


    public RawCommandInfo getUserBasedMonitorCommand(String userName) {
        return new RawCommandInfo(this.installedPath + "qstat -u " + userName);
    }

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            this.installedPath = installedPath + "/";
        }
    }


    public RawCommandInfo getCancelCommand(String jobID) {
        return new RawCommandInfo(this.installedPath + "qcancel " + jobID);
    }

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    public void setJobDescriptionTemplateName(String jobDescriptionTemplateName) {
        this.jobDescriptionTemplateName = jobDescriptionTemplateName;
    }


    public RawCommandInfo getMonitorCommand(String jobID) {
        return new RawCommandInfo(this.installedPath + "squeue -j " + jobID);
    }

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    public String getScriptExtension() {
        return scriptExtension;
    }


    public RawCommandInfo getSubmitCommand(String workingDirectory,String pbsFilePath) {
          return new RawCommandInfo(this.installedPath + "sbatch " +
                workingDirectory + File.separator + FilenameUtils.getName(pbsFilePath));
    }

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    public void setParser(OutputParser parser) {
        this.parser = parser;
    }


    public RawCommandInfo getUserBasedMonitorCommand(String userName) {
        return new RawCommandInfo(this.installedPath + "squeue -u " + userName);
    }

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                 */
                String execuable = app.getStaticWorkingDirectory() + File.separatorChar + Constants.EXECUTABLE_NAME;
                details.setJobDescription(execuable);


//                GFacUtils.updateJobStatus(details, JobState.SUBMITTED);
                RawCommandInfo rawCommandInfo = new RawCommandInfo("/bin/chmod 755 " + execuable + "; " + execuable);


                StandardOutReader jobIDReaderCommandOutput = new StandardOutReader();
                
                CommandExecutor.executeCommand(rawCommandInfo, cluster.getSession(), jobIDReaderCommandOutput);
                String stdOutputString = getOutputifAvailable(jobIDReaderCommandOutput, "Error submitting job to resource");

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Related Classes of org.apache.airavata.gsi.ssh.impl.RawCommandInfo

org.apache.airavata.gfac.ssh.provider.impl.SSHProvider

org.apache.airavata.gsi.ssh.api.job.PBSJobConfiguration

org.apache.airavata.gsi.ssh.api.job.SlurmJobConfiguration

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