Package org.apache.airavata.gfac.core.context

Examples of org.apache.airavata.gfac.core.context.ApplicationContext

57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
        URL resource = this.getClass().getClassLoader().getResource(org.apache.airavata.common.utils.Constants.GFAC_CONFIG_XML);
        File configFile = new File(resource.getPath());
        GFacConfiguration gFacConfiguration = GFacConfiguration.create(configFile, null, null);
        //have to set InFlwo Handlers and outFlowHandlers
        ApplicationContext applicationContext = new ApplicationContext();
        HostDescription host = new HostDescription();
        host.getType().setHostName("localhost");
        host.getType().setHostAddress("localhost");
        applicationContext.setHostDescription(host);
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription();
        ApplicationDeploymentDescriptionType app = appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoLocal");
        app.setApplicationName(name);

        /*
           * Use bat file if it is compiled on Windows
           */
        if (SystemUtils.IS_OS_WINDOWS) {
            URL url = this.getClass().getClassLoader().getResource("echo.bat");
            app.setExecutableLocation(url.getFile());
        } else {
            //for unix and Mac
            app.setExecutableLocation("/bin/echo");
        }

        /*
           * Default tmp location
           */
        String tempDir = System.getProperty("java.io.tmpdir");
        if (tempDir == null) {
            tempDir = "/tmp";
        }

        app.setScratchWorkingDirectory(tempDir);
        app.setStaticWorkingDirectory(tempDir);
        app.setInputDataDirectory(tempDir + File.separator + "input");
        app.setOutputDataDirectory(tempDir + File.separator + "output");
        app.setStandardOutput(tempDir + File.separator + "echo.stdout");
        app.setStandardError(tempDir + File.separator + "echo.stderr");

        applicationContext.setApplicationDeploymentDescription(appDesc);

        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("SimpleEcho");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration, serv.getType().getName());
        jobExecutionContext.setApplicationContext(applicationContext);
        /*
        * Host
        */
        applicationContext.setServiceDescription(serv);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
View Full Code Here
259
260
261
262
263
264
265
266
267
268
269
270
271
272
        jobExecutionContext.setTaskData(taskData);

        // setting the registry
        jobExecutionContext.setRegistry(registry);

        ApplicationContext applicationContext = new ApplicationContext();
        applicationContext.setApplicationDeploymentDescription(applicationDescription);
        applicationContext.setHostDescription(hostDescription);
        applicationContext.setServiceDescription(serviceDescription);
        jobExecutionContext.setApplicationContext(applicationContext);

        List<DataObjectType> experimentInputs = taskData.getApplicationInputs();
        jobExecutionContext.setInMessageContext(new MessageContext(GFacUtils.getInMessageContext(experimentInputs,
                serviceDescription.getType().getInputParametersArray())));
View Full Code Here
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
        jobExecutionContext.setGatewayID(gatewayID);

        // setting the registry
        jobExecutionContext.setRegistry(registry);

        ApplicationContext applicationContext = new ApplicationContext();
//        applicationContext.setApplicationDeploymentDescription(applicationDescription);
        applicationContext.setHostDescription(legacyHostDescription);
        applicationContext.setServiceDescription(legacyServiceDescription);
        applicationContext.setApplicationDeploymentDescription(legacyAppDescription);
        jobExecutionContext.setApplicationContext(applicationContext);

        List<DataObjectType> experimentInputs = taskData.getApplicationInputs();
        jobExecutionContext.setInMessageContext(new MessageContext(GFacUtils.getInMessageContext(experimentInputs,
                legacyServiceDescType.getInputParametersArray())));
View Full Code Here
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        ApplicationContext applicationContext = new ApplicationContext();
        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);
        applicationContext.setApplicationDeploymentDescription(ec2Desc);
        applicationContext.setHostDescription(host);

        AmazonSecurityContext amazonSecurityContext =
                new AmazonSecurityContext(userName, accessKey, secretKey, instanceId);
        jobExecutionContext.addSecurityContext(AmazonSecurityContext.AMAZON_SECURITY_CONTEXT, amazonSecurityContext);
View Full Code Here
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
    public void testGFacConfigWithHost(){
        Assert.assertNotNull(gfac.getGfacConfigFile());
        Assert.assertEquals(1,gfac.getDaemonHandlers().size());
        try {
            JobExecutionContext jec = new JobExecutionContext(GFacConfiguration.create(gfac.getGfacConfigFile(), null, null), "testService");
            ApplicationContext applicationContext = new ApplicationContext();
            HostDescription host = new HostDescription(GsisshHostType.type);
            host.getType().setHostAddress("trestles.sdsc.edu");
            host.getType().setHostName("trestles");
            ((GsisshHostType) host.getType()).setPort(22);
            ((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
            applicationContext.setHostDescription(host);
            jec.setApplicationContext(applicationContext);
            Scheduler.schedule(jec);
            Assert.assertEquals(ExecutionMode.ASYNCHRONOUS, jec.getGFacConfiguration().getExecutionMode());
            Assert.assertEquals("org.apache.airavata.job.TestProvider", jec.getProvider().getClass().getName());
        } catch (ParserConfigurationException e) {
View Full Code Here
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
        public void testAppSpecificConfig(){
            Assert.assertNotNull(gfac.getGfacConfigFile());
            Assert.assertEquals(1,gfac.getDaemonHandlers().size());
            try {
                JobExecutionContext jec = new JobExecutionContext(GFacConfiguration.create(gfac.getGfacConfigFile(), null, null), "UltraScan");
                ApplicationContext applicationContext = new ApplicationContext();
                HostDescription host = new HostDescription(GsisshHostType.type);
                host.getType().setHostAddress("trestles.sdsc.edu");
                host.getType().setHostName("trestles");
                ((GsisshHostType) host.getType()).setPort(22);
                ((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
                applicationContext.setHostDescription(host);
                jec.setApplicationContext(applicationContext);
                Scheduler.schedule(jec);
                Assert.assertEquals(3, jec.getGFacConfiguration().getInHandlers().size());
                Assert.assertEquals(1, jec.getGFacConfiguration().getInHandlers().get(0).getProperties().size());
                Assert.assertEquals(0, jec.getGFacConfiguration().getInHandlers().get(1).getProperties().size());
View Full Code Here
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
        URL resource = this.getClass().getClassLoader().getResource(org.apache.airavata.common.utils.Constants.GFAC_CONFIG_XML);
        File configFile = new File(resource.getPath());
        GFacConfiguration gFacConfiguration = GFacConfiguration.create(configFile, null, null);
        //have to set InFlwo Handlers and outFlowHandlers
        ApplicationContext applicationContext = new ApplicationContext();
        HostDescription host = new HostDescription();
        host.getType().setHostName("localhost");
        host.getType().setHostAddress("localhost");
        applicationContext.setHostDescription(host);
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription();
        ApplicationDeploymentDescriptionType app = appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoLocal");
        app.setApplicationName(name);

        /*
           * Use bat file if it is compiled on Windows
           */
        if (SystemUtils.IS_OS_WINDOWS) {
            URL url = this.getClass().getClassLoader().getResource("echo.bat");
            app.setExecutableLocation(url.getFile());
        } else {
            //for unix and Mac
            app.setExecutableLocation("/bin/echo");
        }

        /*
           * Default tmp location
           */
        String tempDir = System.getProperty("java.io.tmpdir");
        if (tempDir == null) {
            tempDir = "/tmp";
        }

        app.setScratchWorkingDirectory(tempDir);
        app.setStaticWorkingDirectory(tempDir);
        app.setInputDataDirectory(tempDir + File.separator + "input");
        app.setOutputDataDirectory(tempDir + File.separator + "output");
        app.setStandardOutput(tempDir + File.separator + "echo.stdout");
        app.setStandardError(tempDir + File.separator + "echo.stderr");

        applicationContext.setApplicationDeploymentDescription(appDesc);

        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("SimpleEcho");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration, serv.getType().getName());
        jobExecutionContext.setApplicationContext(applicationContext);
        /*
        * Host
        */
        applicationContext.setServiceDescription(serv);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
View Full Code Here
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration, serv.getType().getName());
        // Adding security context
        jobExecutionContext.addSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT, getSecurityContext(app));
        ApplicationContext applicationContext = new ApplicationContext();
        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);
        applicationContext.setApplicationDeploymentDescription(appDesc);
        applicationContext.setHostDescription(host);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
View Full Code Here
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
      URL resource = SSHProviderTestWithSSHAuth.class.getClassLoader().getResource(org.apache.airavata.common.utils.Constants.GFAC_CONFIG_XML);
        GFacConfiguration gFacConfiguration = GFacConfiguration.create(new File(resource.getPath()),null,null);
//        gFacConfiguration.s
        //have to set InFlwo Handlers and outFlowHandlers
        ApplicationContext applicationContext = new ApplicationContext();
        HostDescription host = new HostDescription(SSHHostType.type);
        host.getType().setHostName("bigred");
        host.getType().setHostAddress("bigred2.uits.iu.edu");
        applicationContext.setHostDescription(host);
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription();
        ApplicationDeploymentDescriptionType app = appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoSSH");
        app.setApplicationName(name);

        /*
           * Use bat file if it is compiled on Windows
           */
        if (SystemUtils.IS_OS_WINDOWS) {
            URL url = this.getClass().getClassLoader().getResource("echo.bat");
            app.setExecutableLocation(url.getFile());
        } else {
            //for unix and Mac
            app.setExecutableLocation("/bin/echo");
        }

        /*
         * Job location
        */
        String tempDir = "/tmp";
        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");
        date = date.replaceAll(":", "_");

        tempDir = tempDir + File.separator
                + "EchoSSH" + "_" + date + "_" + UUID.randomUUID();

        app.setScratchWorkingDirectory(tempDir);
        app.setStaticWorkingDirectory(tempDir);
        app.setInputDataDirectory(tempDir + File.separator + "input");
        app.setOutputDataDirectory(tempDir + File.separator + "output");
        app.setStandardOutput(tempDir + File.separator + "echo.stdout");
        app.setStandardError(tempDir + File.separator + "echo.stderr");

        applicationContext.setApplicationDeploymentDescription(appDesc);

        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("EchoSSH");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        jobExecutionContext.setApplicationContext(applicationContext);

        // Add security context
        jobExecutionContext.addSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT, getSecurityContext());
        /*
        * Host
        */
        applicationContext.setServiceDescription(serv);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
    ((StringParameterType)echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
View Full Code Here
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration, serv.getType().getName());
        // Adding security context
        jobExecutionContext.addSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT, getSecurityContext(app));
        ApplicationContext applicationContext = new ApplicationContext();
        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);
        applicationContext.setApplicationDeploymentDescription(appDesc);
        applicationContext.setHostDescription(host);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
View Full Code Here
TOP

Related Classes of org.apache.airavata.gfac.core.context.ApplicationContext

  • org.apache.airavata.core.gfac.services.impl.BigRed2TestWithSSHAuth
  • org.apache.airavata.core.gfac.services.impl.GramProviderTestWithMyProxyAuth
  • org.apache.airavata.core.gfac.services.impl.GSISSHProviderTestWithMyProxyAuth
  • org.apache.airavata.core.gfac.services.impl.LocalProviderTest
  • org.apache.airavata.core.gfac.services.impl.SSHProviderTestWithSSHAuth
  • org.apache.airavata.gfac.core.cpi.BetterGfacImpl
  • org.apache.airavata.gfac.core.cpi.GFacImpl
  • org.apache.airavata.gfac.ec2.EC2ProviderTest
  • org.apache.airavata.job.GFacConfigXmlTest
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.