Package org.apache.airavata.commons.gfac.type

Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

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            throw new RuntimeException("Failed : HTTP error code : "
                    + status);
        }

        ApplicationDescriptor applicationDescriptor = response.getEntity(ApplicationDescriptor.class);
        ApplicationDescription applicationDescription =
                DescriptorUtil.createApplicationDescription(applicationDescriptor);
        return applicationDescription;
    }
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            throw new RuntimeException("Failed : HTTP error code : "
                    + status);
        }

        ApplicationDescriptor applicationDescriptor = response.getEntity(ApplicationDescriptor.class);
        ApplicationDescription applicationDescription =
                DescriptorUtil.createApplicationDescription(applicationDescriptor);
        return applicationDescription;
    }
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                response.getEntity(ApplicationDescriptorList.class);
        ApplicationDescriptor[] applicationDescriptors =
                applicationDescriptorList.getApplicationDescriptors();

        for (ApplicationDescriptor applicationDescriptor : applicationDescriptors) {
            ApplicationDescription applicationDescription =
                    DescriptorUtil.createApplicationDescription(applicationDescriptor);
            applicationDeploymentDescriptionMap.put(
                    applicationDescriptor.getHostdescName(), applicationDescription);
        }
        return applicationDeploymentDescriptionMap;
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        ApplicationDescriptorList applicationDescriptorList =
                response.getEntity(ApplicationDescriptorList.class);
        ApplicationDescriptor[] applicationDescriptors =
                applicationDescriptorList.getApplicationDescriptors();
        for (ApplicationDescriptor applicationDescriptor : applicationDescriptors) {
            ApplicationDescription applicationDescription =
                    DescriptorUtil.createApplicationDescription(applicationDescriptor);
            String[] descriptors =
                    {applicationDescriptor.getServiceDescriptor().getServiceName(),
                            applicationDescriptor.getHostdescName()};
            applicationDeploymentDescriptionMap.put(descriptors, applicationDescription);
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                serviceDescription2.getType().getName()));

        // Deployment descriptor
        File executable = getFile("src/test/resources/comma_data.sh");
        Runtime.getRuntime().exec("chmod +x "+executable.getAbsolutePath());
    ApplicationDescription applicationDeploymentDescription = descriptorBuilder
                .buildApplicationDeploymentDescription("comma_app_localhost", executable.getAbsolutePath(), "/tmp");
    ApplicationDescription applicationDeploymentDescription2 = descriptorBuilder
                .buildApplicationDeploymentDescription("echo_app_localhost", "/bin/echo", "/tmp");

        log("Adding deployment description ...");
        airavataAPI.getApplicationManager().addApplicationDescription(serviceDescription, hostDescription,
                applicationDeploymentDescription);

        Assert.assertTrue(airavataAPI.getApplicationManager().isApplicationDescriptorExists(
                serviceDescription.getType().getName(), hostDescription.getType().getHostName(),
                applicationDeploymentDescription.getType().getApplicationName().getStringValue()));
       
        airavataAPI.getApplicationManager().addApplicationDescription(serviceDescription2, hostDescription,
                applicationDeploymentDescription2);

        Assert.assertTrue(airavataAPI.getApplicationManager().isApplicationDescriptorExists(
                serviceDescription2.getType().getName(), hostDescription.getType().getHostName(),
                applicationDeploymentDescription2.getType().getApplicationName().getStringValue()));
  }
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        else {
          //TODO
        }


        ApplicationDescription applicationDeploymentDescription = jobExecutionContext.getApplicationContext().getApplicationDeploymentDescription();
        ApplicationDeploymentDescriptionType app = applicationDeploymentDescription.getType();
        GridFtp ftp = new GridFtp();

        try {

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     * @return shell command to be executed
     * @throws GFacProviderException GFacProviderException
     */
    private String createShellCmd(JobExecutionContext jobExecutionContext) throws GFacProviderException {
        String command = "";
        ApplicationDescription appDesc = jobExecutionContext.getApplicationContext().
                getApplicationDeploymentDescription();

        if(appDesc.getType() instanceof Ec2ApplicationDeploymentType) {
            Ec2ApplicationDeploymentType type = (Ec2ApplicationDeploymentType) appDesc.getType();
            if(type.getExecutable() != null) {
                command = type.getExecutableType() + " " + type.getExecutable();
            } else {
                command = "sh" + " " + type.getExecutable();
            }
            command = setCmdParams(jobExecutionContext, command);

        } else {
            ApplicationDeploymentDescriptionType type = appDesc.getType();
            command = "sh" + " " + type.getExecutableLocation();
            command = setCmdParams(jobExecutionContext, command);
        }

        return command + '\n';
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    }

    public static ApplicationDescription registerApplication(String appName, String exeuctableLocation, String scratchWorkingDirectory, String hostName,
                                                                       String projAccNumber, String queueName, String cpuCount, String nodeCount, String maxMemory) throws Exception {
        // Create Application Description
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setCpuCount(Integer.parseInt(cpuCount));
        app.setNodeCount(Integer.parseInt(nodeCount));
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue(appName);
        app.setExecutableLocation(exeuctableLocation);
        app.setScratchWorkingDirectory(scratchWorkingDirectory);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(projAccNumber);
        QueueType queueType = app.addNewQueue();
        queueType.setQueueName(queueName);
        app.setMaxMemory(Integer.parseInt(maxMemory));
        return appDesc;
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        serviceDescriptor.setOutputParams(outputParams);
        return serviceDescriptor;
    }

    public static ApplicationDescription createApplicationDescription(ApplicationDescriptor applicationDescriptor){
        ApplicationDescription applicationDescription = new ApplicationDescription();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue(applicationDescriptor.getName());
        applicationDescription.getType().setApplicationName(name);
        applicationDescription.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
        applicationDescription.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

        if (applicationDescriptor.getInputDir() != null){
            applicationDescription.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
        }
        if (applicationDescriptor.getOutputDir() != null){
            applicationDescription.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
        }
        if (applicationDescriptor.getStdIn() != null){
            applicationDescription.getType().setStandardInput(applicationDescriptor.getStdIn());
        }
        if (applicationDescriptor.getStdOut() != null){
            applicationDescription.getType().setStandardOutput(applicationDescriptor.getStdOut());
        }
        if (applicationDescriptor.getStdError() != null){
            applicationDescription.getType().setStandardError(applicationDescriptor.getStdError());
        }
        if (applicationDescriptor.getStaticWorkigDir() != null){
            applicationDescription.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
        }
        HashMap<String,String> environmentVariables = applicationDescriptor.getEnvironmentVariables();
        if (environmentVariables != null && !environmentVariables.isEmpty()){
            NameValuePairType[] appEnviVariablesArray = new NameValuePairType[environmentVariables.size()];
            for(String key : environmentVariables.keySet()) {
                int i = 0;
                NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                nameValuePairType.setName(key);
                nameValuePairType.setValue(environmentVariables.get(key));
                appEnviVariablesArray[i] = nameValuePairType;
                i++;
            }
            applicationDescription.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
        }

        //set advanced options according app desc type
        if(applicationDescriptor.getApplicationDescType() != null && !applicationDescriptor.getApplicationDescType().isEmpty()){
            if (applicationDescriptor.getApplicationDescType().equals(ApplicationDescriptorTypes.HPC_APP_DEP_DESC_TYPE)){
                ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
                appDesc.getType().setApplicationName(name);
                appDesc.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
                appDesc.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

                if (applicationDescriptor.getInputDir() != null){
                    appDesc.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
                }
                if (applicationDescriptor.getOutputDir() != null){
                    appDesc.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
                }
                if (applicationDescriptor.getStdIn() != null){
                    appDesc.getType().setStandardInput(applicationDescriptor.getStdIn());
                }
                if (applicationDescriptor.getStdOut() != null){
                    appDesc.getType().setStandardOutput(applicationDescriptor.getStdOut());
                }
                if (applicationDescriptor.getStdError() != null){
                    appDesc.getType().setStandardError(applicationDescriptor.getStdError());
                }
                if (applicationDescriptor.getStaticWorkigDir() != null){
                    appDesc.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
                }
                HashMap<String,String> envVariables = applicationDescriptor.getEnvironmentVariables();
                if (envVariables != null && !envVariables.isEmpty()){
                    NameValuePairType[] appEnviVariablesArray = new NameValuePairType[envVariables.size()];
                    for(String key : envVariables.keySet()) {
                        int i = 0;
                        NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                        nameValuePairType.setName(key);
                        nameValuePairType.setValue(envVariables.get(key));
                        appEnviVariablesArray[i] = nameValuePairType;
                        i++;
                    }
                    appDesc.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
                }

                HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();

                ProjectAccountType projectAccountType = app.addNewProjectAccount();
                if (applicationDescriptor.getProjectNumber() != null){
                    projectAccountType.setProjectAccountNumber(applicationDescriptor.getProjectNumber());
                }
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        airavataAPI.getApplicationManager().addServiceDescription(serviceDescription);
        Assert.assertTrue(airavataAPI.getApplicationManager().isServiceDescriptorExists(
                serviceDescription.getType().getName()));

        // Deployment descriptor
        ApplicationDescription applicationDeploymentDescription = descriptorBuilder
                .buildApplicationDeploymentDescription("EchoApplication", "/bin/echo", "/tmp");

        log("Adding deployment description ...");
        airavataAPI.getApplicationManager().addApplicationDescription(serviceDescription, hostDescription,
                applicationDeploymentDescription);

        Assert.assertTrue(airavataAPI.getApplicationManager().isApplicationDescriptorExists(
                serviceDescription.getType().getName(), hostDescription.getType().getHostName(),
                applicationDeploymentDescription.getType().getApplicationName().getStringValue()));

        log("Saving workflow ...");
        Workflow workflow = new Workflow(getWorkflowComposeContent("src/test/resources/EchoWorkflow.xwf"));
        airavataAPI.getWorkflowManager().addWorkflow(workflow);
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