Package nexj.core.build

Examples of nexj.core.build.WiXWriter$Variable

286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
        List<GradsVariable>  vars  = gradsDDF.getVariables();
        List<GradsAttribute> attrs = gradsDDF.getAttributes();
        //TODO: ensembles
        List<GradsDimension>       dims = gradsDDF.getDimensions();
        Variable                   v;
        int                        numZ  = 0;
        HashMap<String, Dimension> zDims = new HashMap<String, Dimension>();
        for (GradsDimension dim : dims) {
            String    name  = getVarName(dim);
            int       size  = dim.getSize();
            Dimension ncDim = new Dimension(name, size, true);
            ncFile.addDimension(null, ncDim);
            if (name.equals(ENS_VAR)) {
                v = new Variable(ncFile, null, null, name, DataType.STRING,
                                 name);
                v.addAttribute(new Attribute("standard_name", "ensemble"));
                v.addAttribute(new Attribute(_Coordinate.AxisType,
                                             AxisType.Ensemble.toString()));
                List<String> names =
                    gradsDDF.getEnsembleDimension().getEnsembleNames();
                String[] nameArray = new String[names.size()];
                for (int i = 0; i < nameArray.length; i++) {
                    nameArray[i] = names.get(i);
                }
                Array dataArray = Array.factory(DataType.STRING,
                                      new int[] { nameArray.length },
                                      nameArray);
                v.setCachedData(dataArray, false);
            } else {
                double[] vals = dim.getValues();
                v = new Variable(ncFile, null, null, name, DataType.DOUBLE,
                                 name);
                v.addAttribute(new Attribute("units", dim.getUnit()));
                if (name.equals(Y_VAR)) {
                    v.addAttribute(new Attribute("long_name", "latitude"));
                    v.addAttribute(new Attribute("standard_name",
                            "latitude"));
                    v.addAttribute(new Attribute("axis", "Y"));
                    sizeY = dim.getSize();
                    v.addAttribute(new Attribute(_Coordinate.AxisType,
                            AxisType.Lat.toString()));
                } else if (name.equals(X_VAR)) {
                    v.addAttribute(new Attribute("long_name", "longitude"));
                    v.addAttribute(new Attribute("standard_name",
                            "longitude"));
                    v.addAttribute(new Attribute("axis", "X"));
                    v.addAttribute(new Attribute(_Coordinate.AxisType,
                            AxisType.Lon.toString()));
                    sizeX = dim.getSize();
                } else if (name.equals(Z_VAR)) {
                    numZ = size;
                    zDims.put(name, ncDim);
                    v.addAttribute(new Attribute("long_name", "level"));
                    addZAttributes(dim, v);
                } else if (name.equals(TIME_VAR)) {
                    v.addAttribute(new Attribute("long_name", "time"));
                    v.addAttribute(new Attribute(_Coordinate.AxisType,
                            AxisType.Time.toString()));
                }
                ArrayDouble.D1 varArray = new ArrayDouble.D1(size);
                for (int i = 0; i < vals.length; i++) {
                    varArray.set(i, vals[i]);
                }
                v.setCachedData(varArray, false);
            }
            ncFile.addVariable(null, v);
        }
        if (numZ > 0) {
            GradsDimension zDim = gradsDDF.getZDimension();
            double[]       vals = zDim.getValues();
            for (GradsVariable var : vars) {
                int nl = var.getNumLevels();
                if ((nl > 0) && (nl != numZ)) {
                    String name = Z_VAR + nl;
                    if (zDims.get(name) == null) {
                        Dimension ncDim = new Dimension(name, nl, true);
                        ncFile.addDimension(null, ncDim);
                        Variable vz = new Variable(ncFile, null, null, name,
                                          DataType.DOUBLE, name);
                        vz.addAttribute(new Attribute("long_name", name));
                        vz.addAttribute(new Attribute("units",
                                zDim.getUnit()));
                        addZAttributes(zDim, vz);
                        ArrayDouble.D1 varArray = new ArrayDouble.D1(nl);
                        for (int i = 0; i < nl; i++) {
                            varArray.set(i, vals[i]);
                        }
                        vz.setCachedData(varArray, false);
                        ncFile.addVariable(null, vz);
                        zDims.put(name, ncDim);
                    }
                }
            }
        }
        zDims = null;
        for (GradsVariable var : vars) {
            String coords = "latitude longitude";
            int    nl     = var.getNumLevels();
            if (nl > 0) {
                if (nl == numZ) {
                    coords = "level " + coords;
                } else {
                    coords = Z_VAR + nl + " " + coords;
                }
            }
            coords = "time " + coords;
            if (gradsDDF.getEnsembleDimension() != null) {
                coords = "ensemble " + coords;
            }
            v = new Variable(ncFile, null, null, var.getName(),
                             DataType.FLOAT, coords);
            v.addAttribute(new Attribute("long_name", var.getDescription()));
            if (var.getUnitName() != null) {
                v.addAttribute(new Attribute("units", var.getUnitName()));
            }
View Full Code Here
60
61
62
63
64
65
66
67
68
69
70
71
72
   * @param ncfile the NetcdfFile to test
   * @return true if we think this is a Zebra file.
   */
  public static boolean isMine(NetcdfFile ncfile) {

    Variable v = ncfile.findVariable("time_offset");
    if (v == null || !v.isCoordinateVariable()) return false;
    String desc = v.getDescription();
    if (desc == null || !desc.equals("Time delta from start_time")) return false;

    if (null == ncfile.findGlobalAttribute( "start_date")) return false;
    if (null == ncfile.findGlobalAttribute( "start_time")) return false;

View Full Code Here
87
88
89
90
91
92
93
94
95
96
97
98
      start = df.parse(start_date);
    } catch (ParseException e) {
      throw new RuntimeException("Cant read start_date="+start_date);
    }

    Variable v = ds.findVariable("time_offset");
    v.addAttribute(new Attribute( "units", "seconds since "+dfo.toDateTimeString(start)));

    Group root = ds.getRootGroup();
    root.addAttribute(new Attribute( "Convention", "Suomi-Station-CDM"));   
    ds.finish();
  }
View Full Code Here
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
    return 0;
  }

  // section reading for member data
  static public ucar.ma2.Array readSection(ParsedSectionSpec cer) throws IOException, InvalidRangeException {
    Variable inner = null;
    List<Range> totalRanges = new ArrayList<Range>();
    ParsedSectionSpec current = cer;
    while (current != null) {
      totalRanges.addAll( current.section.getRanges());
      inner = current.v;
      current = current.child;
    }

    Section total = new Section( totalRanges);
    Array result = Array.factory(inner.getDataType(), total.getShape());

    // must be a Structure
    Structure outer = (Structure) cer.v;
    Structure outerSubset = outer.select( cer.child.v.getShortName()); // allows IOSPs to optimize for  this case
    ArrayStructure outerData = (ArrayStructure) outerSubset.read(cer.section);
View Full Code Here
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
    String timeVars = ds.findAttValueIgnoreCase(null, "timeVariables", "");
    StringTokenizer stoker = new StringTokenizer( timeVars, ", ");
    while (stoker.hasMoreTokens()) {
      String vname = stoker.nextToken();
      Variable v = ds.findVariable(vname);
      if (v != null) {
        v.addAttribute(new Attribute(_Coordinate.AxisType, AxisType.Time.toString()));
      } else {
        parseInfo.format(" cant find time variable %s\n", vname);
      }
    }

    String locVars = ds.findAttValueIgnoreCase(null, "stationLocationVariables", "");
    stoker = new StringTokenizer( locVars, ", ");
    int count = 0;
    while (stoker.hasMoreTokens()) {
      String vname = stoker.nextToken();
      Variable v = ds.findVariable(vname);
      if (v != null) {
        AxisType atype = count == 0 ? AxisType.Lat : count == 1 ? AxisType.Lon : AxisType.Height;
        v.addAttribute(new Attribute(_Coordinate.AxisType, atype.toString()));
      } else {
        parseInfo.format(" cant find time variable %s\n",vname);
      }
      count++;
    }
View Full Code Here
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
   */
  public AtmosLnPressure(NetcdfFile ds, Dimension timeDim, List<Parameter> params) {
    super(timeDim);

    String p0name = getParameterStringValue(params, P0);
    Variable p0var = ds.findVariable(p0name);
    double p0;
    try {
      p0 = p0var.readScalarDouble();
    } catch (IOException e) {
      throw new IllegalArgumentException("AtmosLnPressure failed to read "
          + p0name + " err= " + e.getMessage());
    }

    String levName = getParameterStringValue(params, LEV);
    Variable levVar = ds.findVariable(levName);

    try {
      Array lev = levVar.read();
      assert lev.getRank() == 1;
      pressure = new ArrayDouble.D1( (int) lev.getSize());
      IndexIterator ii = pressure.getIndexIterator();
      while (lev.hasNext()) {
        double result = p0 * Math.exp(-lev.nextDouble());
 
View Full Code Here
99
100
101
102
103
104
105
106
107
108
109
110
111
112
    if (flatten) {
      ArrayStructure as = (ArrayStructure) data;

      // make list of names
      List<String> names = new ArrayList<String>();
      Variable nested = v;
      while (nested.isMemberOfStructure()) {
        names.add( 0, nested.getShortName());
        nested = nested.getParentStructure();
      }

      StructureMembers.Member m = findNested(as, names, v.getShortName());
      Array mdata = (Array) m.getDataArray();
      if (mdata instanceof ArraySequenceNested) {
View Full Code Here
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
    protected void findCoordinateAxes(NetcdfDataset ds) {

      for (VarProcess vp : varList) {
        if (vp.isCoordinateVariable) continue;

        Variable ncvar = vp.v;
        if (!(ncvar instanceof VariableDS)) continue; // cant be a structure

        String dimName = findAlias(ds, ncvar);
        if (dimName.length() == 0) // none
          continue;
        Dimension dim = ds.findDimension(dimName);
        if (null != dim) {
          vp.isCoordinateAxis = true;
          parseInfo.format(" Coordinate Axis added (alias) = %s for dimension %s\n", vp.v.getFullName(), dimName);
        }
      }

      // coordinates is an alias for _CoordinateAxes
      for (VarProcess vp : varList) {
        if (vp.coordAxes == null) { // dont override if already set
          String coordsString = ds.findAttValueIgnoreCase(vp.v, "coordinates", null);
          if (coordsString != null) {
            vp.coordinates = coordsString;
          }
        }
      }

      super.findCoordinateAxes(ds);

      /////////////////////////
      // now we start forcing
      HashMap<AxisType, VarProcess> map = new HashMap<AxisType, VarProcess>();

      // find existing axes, so we dont duplicate
      for (VarProcess vp : varList) {
        if (vp.isCoordinateAxis) {
          AxisType atype = getAxisType(ds, (VariableEnhanced) vp.v);
          if (atype != null)
            map.put(atype, vp);
        }
      }

      // look for time axes based on units
      if (map.get(AxisType.Time) == null) {
        for (VarProcess vp : varList) {
          Variable ncvar = vp.v;
          if (!(ncvar instanceof VariableDS)) continue; // cant be a structure
          String unit = ncvar.getUnitsString();

          if (SimpleUnit.isDateUnit(unit)) {
            vp.isCoordinateAxis = true;
            map.put(AxisType.Time, vp);
            parseInfo.format(" Time Coordinate Axis added (unit) = %s from unit %s\n", vp.v.getFullName(), unit);
            //break; // allow multiple time coords
          }
        }
      }

      // look for missing axes by using name hueristics
      for (VarProcess vp : varList) {
        if (vp.isCoordinateVariable) continue;
        Variable ncvar = vp.v;
        if (!(ncvar instanceof VariableDS)) continue; // cant be a structure

        AxisType atype = getAxisType(ds, (VariableEnhanced) vp.v);
        if (atype != null) {
          if (map.get(atype) == null) {
View Full Code Here
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
    protected AxisType getAxisType(NetcdfDataset ds, VariableEnhanced ve) {
      AxisType result = getAxisTypeCoards(ds, ve);
      if (result != null) return result;

      Variable v = (Variable) ve;
      String vname = v.getShortName();
      String unit = v.getUnitsString();
      if (unit == null) unit = "";
      String desc = v.getDescription();
      if (desc == null) desc = "";

      if (vname.equalsIgnoreCase("x") || findAlias(ds, v).equalsIgnoreCase("x"))
        return AxisType.GeoX;
View Full Code Here
60
61
62
63
64
65
66
67
68
69
70
   * @return true if we think this is a ATDRadarConvention file.
   */
  public static boolean isMine(NetcdfFile ncfile) {
    // not really sure until we can examine more files
    Dimension s = ncfile.findDimension("cedric_general_scaling_factor");
    Variable v = ncfile.findVariable("cedric_run_date");
    if(v != null && s != null)
        return true;
    else
        return false;
  }
View Full Code Here
TOP

Related Classes of nexj.core.build.WiXWriter$Variable

  • cnslab.cnsnetwork.PlotResult
  • com.intellij.psi.PsiElement
  • net.sf.mzmine.modules.rawdatamethods.rawdataimport.fileformats.NetCDFReadTask
  • org.apache.tools.ant.DirectoryScanner
  • org.apache.tools.ant.taskdefs.Execute
  • org.eclipse.php.internal.core.codeassist.templates.CodeCompletionRequestor
  • org.geoserver.wcs.responses.NetCDFOutputManager
  • org.geppetto.core.simulator.UpdateRecordingStateTreeVisitor
  • ucar.nc2.dataset.conv.CEDRICRadarConvention
  • ucar.nc2.dataset.conv.DefaultConvention
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.