Package net.sourceforge.align.formatter

Examples of net.sourceforge.align.formatter.AlFormatter

48
49
50
51
52
53
54
55
56
57
    }

    filter = FilterDecorators.decorate(filter);

    Parser parser = new AlParser(getIn());
    Formatter formatter = new AlFormatter(getOut());
    List<Alignment> alignmentList = parser.parse();
    alignmentList = filter.apply(alignmentList);
    formatter.format(alignmentList);
  }
View Full Code Here
94
95
96
97
98
99
100
101
102
103
104
        }
       
      } else {
        throw new UnknownParameterException("class");
      }
      Formatter formatter = new AlFormatter(getOut());
      formatter.format(alignmentList);
    } catch (IOException e) {
      throw new IORuntimeException(e);
    }
  }
View Full Code Here
39
40
41
42
43
44
45
46
47
48
49
      throw new MissingParameterException("class");
    }
    Formatter formatter;
    if (cls.equals("al")) {
      Writer writer = getSingleWriter(commandLine);
      formatter = new AlFormatter(writer);
    } else if (cls.equals("txt")) {
      if (commandLine.getArgs().length != 2) {
        throw new WrongArgumentCountException("2", commandLine.getArgs().length);
      }
      String sourceFileName = commandLine.getArgs()[0];
View Full Code Here
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
      sourceAlgorithm = new NullModifyAlgorithm();
    } else {
      throw new UnknownParameterException("part");
    }
   
    Formatter formatter = new AlFormatter(getOut());
   
    Filter filter = new Modifier(sourceAlgorithm, targetAlgorithm);
    filter = FilterDecorators.decorate(filter);

    if (alignmentList == null) {
      alignmentList = parser.parse();
    }
   
    alignmentList = filter.apply(alignmentList);
    formatter.format(alignmentList);
  }
View Full Code Here
68
69
70
71
72
73
74
75
76
77
    }
   
    filter = FilterDecorators.decorate(filter);
   
    Parser parser = new AlParser(getIn());
    Formatter formatter = new AlFormatter(getOut());
    List<Alignment> alignmentList = parser.parse();
    alignmentList = filter.apply(alignmentList);
    formatter.format(alignmentList);
  }
View Full Code Here
100
101
102
103
104
105
106
107
108
109
110
111
      alignmentList = parser.parse();
      AlignAlgorithm algorithm = createAlgorithm(commandLine, alignmentList);
      filter = new Aligner(algorithm);
    }
    filter = FilterDecorators.decorate(filter);
    Formatter formatter = new AlFormatter(getOut());
    if (alignmentList == null) {
      alignmentList = parser.parse();
    }
    alignmentList = filter.apply(alignmentList);
    formatter.format(alignmentList);
  }
View Full Code Here
TOP

Related Classes of net.sourceforge.align.formatter.AlFormatter

  • net.sourceforge.align.ui.console.command.AlignCommand
  • net.sourceforge.align.ui.console.command.FormatCommand
  • net.sourceforge.align.ui.console.command.MacroCommand
  • net.sourceforge.align.ui.console.command.ModifyCommand
  • net.sourceforge.align.ui.console.command.ParseCommand
  • net.sourceforge.align.ui.console.command.SelectCommand
  • net.sourceforge.align.util.bind.al.Alignmentlist
  • net.sourceforge.align.util.bind.al.Segmentlist
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.