Package net.sf.mzmine.modules.peaklistmethods.identification.mascot.data

Examples of net.sf.mzmine.modules.peaklistmethods.identification.mascot.data.PeptideIdentityDataFile


  public static double getIonCoverage(DataPoint[] dataPoints,
      Peptide peptide, SerieIonType ionType, double intensityThreshold) {

    PeptideFragmentation fragmentation = peptide.getFragmentation();
    FragmentIon[] fragmentIons = fragmentation.getFragmentIons(ionType);
    PeptideIdentityDataFile peptideDataFile = peptide.getScan()
        .getPeptideDataFile();
    double fragmentIonMassErrorTol = peptideDataFile
        .getFragmentIonMassErrorTolerance();

    DataPoint[] matchedDataPoints = getMatchedIons(dataPoints,
        fragmentIons, fragmentIonMassErrorTol, intensityThreshold);
    double ionCoverage = calculateSerieCoverage(matchedDataPoints,
View Full Code Here

TOP

Related Classes of net.sf.mzmine.modules.peaklistmethods.identification.mascot.data.PeptideIdentityDataFile

Copyright © 2018 www.massapicom. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.