Examples of info.unipax.bina.platform.tasks.Tasks.SequencedTask

Package info.unipax.bina.platform.tasks.Tasks

Examples of info.unipax.bina.platform.tasks.Tasks.SequencedTask

info.unipax.bina.platform.tasks.Tasks.SequencedTask

    if (activeController instanceof StandardController)
    {
      this.controller = (StandardController) activeController;
    }          
    
    final SequencedTask t = Tasks.createSequencedTask("perform analysis");    
    
    t.addTask(session.getMainWindow().createOpenFile(file));
    
    t.addTask(new Task("add wait")
    {
      public void run() 
      {          
        initializeController();
        controller.getVisualization().addLock(t);
      }
    });  
    
    t.addTask(new Task("map Data")
    {
      public void run() 
      {          
        mapData(session, task);        
      }
    });    
    
    t.addTask(new Task("analysis")
    {
      public void run() 
      {  
        UDISPerspective.mapOfData.put(controller, new DataMethods(session, controller));
        
        initializeController();        


        UDISPerspective.mapOfData.get(controller).makeAnalysis();          
      }
    });
    
    t.addTask(new Task("remove wait")
    {
      public void run()
       {          
        controller.getVisualization().removeLock(t);
      }

View Full Code Here

  /**
   * Analysis at the beginning.
   * */  
  public void makeAnalysis()
  {
    final SequencedTask t = Tasks.createSequencedTask("perform analysis");
    
    t.addTask(new Task("wait")
    {
      public void run() 
      {          
        controller.getVisualization().addLock(t);
      }
    });
    
    t.addTask(new Task("analysis")
    {
      public void run() 
      {          
        performAnalysis();
      }
    });    
    
    t.addTask(new Task("color edges")
    {
      public void run() 
      {          
        controller.preUpdateAll();
        colorEdges();
        controller.postUpdateAll();
      }
    });  
    
    t.addTask(new Task("wait")
    {
      public void run()
       {          
        controller.getVisualization().removeLock(t);
      }

View Full Code Here

  /**
   * Choose new pathways to draw
   * */  
  public void makeSecondAnalysis()
  {
    final SequencedTask t = Tasks.createSequencedTask("perform analysis");
    
    t.addTask(new Task("wait")
    {
      public void run() 
      {          
        controller.getVisualization().addLock(t);
      }
    });
    
    t.addTask(new Task("delete metalayer")
    {
      public void run()
      {              
        deleteBackground();                        
      }
    });    
    
    t.addTask(new Task("analysis")
    {
      public void run() 
      {          
        secondAnalysis();
      }
    });    
    
    t.addTask(new Task("color edges")
    {
      public void run() 
      {          
        controller.preUpdateAll();
        colorEdges();
        controller.postUpdateAll();
      }
    });    
    
    controller.updateAll(t);  
    
    IRootComponent activeRoot = controller.getMappingModel().getRootComponent();        
    if (activeRoot.getBackgroundModel() != null)
    {
      t.addTask(new Task("calculate metalayer")
      {
        public void run()
        {          
          calculateBackground();                
        }
      });
      
      t.addTask(new Task("draw metalayer")
      {
        public void run()
        {          
          insertBackground();          
        }
      });
    }      
    t.addTask(new Task("wait")
    {
      public void run()
       {          
        controller.getVisualization().removeLock(t);
      }

View Full Code Here

    {
      JOptionPane.showMessageDialog(mainWindow.getRootPane(), "This function can be used only without metalayer. Please first delete the metalayer");
    }
    else
    {      
      final SequencedTask t = Tasks.createSequencedTask("expand or shrink the pathway");
        
      t.addTask(new Task("wait")
      {
        public void run() 
        {          
          controller.getVisualization().addLock(t);
        }
      });
      
      t.addTask(new Task("search for pathway to expand")
      {
        public void run() 
        {          
          selectedNodeID = searchForNodeID();
        }
      });
      
      t.addTask(new Task("shrink or expand the pathway")
      {
        public void run() 
        {  
          
          final SequencedTask tt = Tasks.createSequencedTask("shrink the pathway");
          
          if (listExpandPath.contains(actPath))
          {          
            tt.addTask(new Task("shrink")
            {
              public void run() 
              {          
                shrinkPathway();
              }
            });  
            
            controller.updateAll(tt);  
          }
          else 
          {
            tt.addTask(new Task("expand pathway")
            {
              public void run() 
              {              
                expandPathway();//look for proteins
              }
            });
                
            tt.addTask(new Task("clean map")
            {
              public void run() 
              {          
                cleanMap();//delete all groups from the map
              }
            });


            tt.addTask(new Task("draw new proteins")
            {
              public void run() 
              {
                drawNewProteins();//draw the proteins, that were found
              }
            });  
            
            controller.updateAll(tt);
            
            tt.addTask(new Task("group new nodes")
            {
              public void run()
              {          
                findNewNodes();//find new nodes, group and draw them            
              }
            });              
          }
          
          try
          {
            tt.run();
          } catch (InterruptedException e)
          {
            e.printStackTrace();
          }
        }

View Full Code Here

      if (brc.getLayouter().getName().equalsIgnoreCase("Hierarchic Layouter")) 
      {
        cleanMap();
        controller.updateAll();  
      }
      final SequencedTask t = Tasks.createSequencedTask("Metalayer");
      
      t.addTask(new Task("weit")
      {
        public void run() 
        {                    
          controller.getVisualization().addLock(t);
        }
      });
      
      t.addTask(new Task("calculate metalayer")
      {
        public void run()
        {          
          calculateBackground();              
        }
      });
      
      t.addTask(new Task("draw metalayer")
      {
        public void run()
        {          
          insertBackground();
          controller.getVisualization().removeLock(t);
        }
      });


      Core.getProcessManager().queue(t);  
    }
    
    else
    {
      final SequencedTask t = Tasks.createSequencedTask("Metalayer");
      
      t.addTask(new Task("wait")
      {
        public void run() 
        {                    
          controller.getVisualization().addLock(t);
        }
      });
      
      t.addTask(new Task("delete metalayer")
      {
        public void run() 
        {  
          ListHashMap<Pathway, BasicNodeComponentUI> map = new ListHashMap<Pathway, BasicNodeComponentUI>();
          if (groupList.isEmpty())
          {
            Integer n = 0;  
            if (!mapOfGroupsE.isEmpty())
            {
              map.putAll(mapOfGroupsE);
            }
            else 
            {
              map.putAll(mapOfGroups);
            }
            for(Entry<Pathway, LinkedList<BasicNodeComponentUI>> entry : map.entrySet())
            {
              if(!entry.getKey().isInitialized())
              {
                groupNodes(entry, 0);
              }
              else if (entry.getValue() == null) 
              {
                n=n+1;
              }
              else
              {
                n=n+1;        
                groupNodes(entry, ColorsToPathways.get(entry.getKey()));
              }                
            }
          }
        }
      });        
      
      t.addTask(new Task("delete metalayer")
      {
        public void run()
        {          
          deleteBackground();              
        }
      });      
      
      t.addTask(new Task("wait")
      {
        public void run()
        {            
          controller.getVisualization().removeLock(t);
        }

View Full Code Here

  {
    IRootComponent activeRoot = controller.getMappingModel().getRootComponent();    
    
    if (activeRoot.getBackgroundModel() != null)
    {  
      final SequencedTask t = Tasks.createSequencedTask("Metalayer");
    
      t.addTask(new Task("wait")
      {
        public void run() 
        {          
          controller.getVisualization().addLock(t);
        }
      });
    
      t.addTask(new Task("calculate metalayer")
      {
        public void run()
        {          
          calculateBackground();
        }
      });
    
      t.addTask(new Task("draw metalayer")
      {
        public void run()
        {          
          insertBackground();
          controller.getVisualization().removeLock(t);

View Full Code Here

  /**
   * Collapse or open all groups.  
   * */
  private void collapsGroups()
  {  
    final SequencedTask t = Tasks.createSequencedTask("collapse or open groups");
    
    t.addTask(new Task("wait")
    {
      public void run() 
      {          
        controller.getVisualization().addLock(t);
      }
    });
    
    t.addTask(new Task("collapse")
    {
      public void run() 
      {    
        NetworkAnalysisWorkspace workspace = NetworkAnalysisWorkspace.getInstance(Activator.getBundleContext());
        Controller<?> activeController = workspace.getActiveController();
    
        if (activeController instanceof StandardController)
        {
          controller = (StandardController) activeController;
        }
        if(controller!=null)
        {      
          LinkedList<IHierarchyComponent> groupList = new LinkedList<IHierarchyComponent>();
            
          java.util.Collection<IComponent> components =controller.getMappingModel().getRootComponent().getChildren();
          for (IComponent c : components)
          {
            if (c instanceof IHierarchyComponent)
            {          
              IHierarchyComponent group = ((IHierarchyComponent) c);
              groupList.add(group);;
            }
          }      
      
          for (IHierarchyComponent g : groupList)            
          {
            if (!((INodeComponentUI) g.getUI()).getLabel().isEmpty())
            {            
              try 
              {
                g.setCollapsed(collapse);                  
              } 
              catch (ModelException e)
              {          
                e.printStackTrace();
              }
            }            
          }  
        }          
      }
    });
    
    controller.updateAll(t);  


    t.addTask(new Task("change collapse")
    {
      public void run()
      {    
        if(collapse)
        {
          collapse = false;          
        }
        else
        {
          collapse=true;            
        }          
      }
    });
    
    
    t.addTask(new Task("delete metalayer")
    {
      public void run()
      {              
        deleteBackground();                        
      }
    });    
    
    t.addTask(new Task("color groups")
    {
      public void run()
      {              
        colorGroupList();                        
      }
    });    
    
    controller.updateAll(t);  
    
    IRootComponent activeRoot = controller.getMappingModel().getRootComponent();        
    if (activeRoot.getBackgroundModel() != null)
    {
      t.addTask(new Task("calculate metalayer")
      {
        public void run()
        {          
          calculateBackground();                
        }
      });
      
      t.addTask(new Task("draw metalayer")
      {
        public void run()
        {          
          insertBackground();          
        }
      });
    }  
    
    t.addTask(new Task("remove wait")
    {
      public void run()
      {          
        controller.getVisualization().removeLock(t);
      }

View Full Code Here

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Related Classes of info.unipax.bina.platform.tasks.Tasks.SequencedTask

info.unipax.bina.example.DataMethods

info.unipax.bina.example.UDISStartType

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