Package htsjdk.samtools.util

Examples of htsjdk.samtools.util.Md5CalculatingInputStream


            }
            out.close();
        }

        // Run the input file through the FifoBuffer and back into another file
        final Md5CalculatingInputStream in   = new Md5CalculatingInputStream(new FileInputStream(inputFile), null);
        final Md5CalculatingOutputStream out = new Md5CalculatingOutputStream(new FileOutputStream("/dev/null"), null);
        final PrintStream outStream = new PrintStream(out);
        final FifoBuffer buffer = new FifoBuffer(in, outStream);
        buffer.BUFFER_SIZE = 128 * 1024 * 1024;
        buffer.doWork();

        in.close();
        out.close();
        final String inputMd5  = in.md5();
        final String outputMd5 = out.md5();
        Assert.assertEquals(outputMd5, inputMd5, "MD5s do not match between input and output.");
        inputFile.delete();
    }
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