Package htsjdk.samtools.filter

Examples of htsjdk.samtools.filter.DuplicateReadFilter


        }
        iterator.setEmitUncoveredLoci(false);
        iterator.setMappingQualityScoreCutoff(MINIMUM_MAPPING_QUALITY);
        iterator.setSamFilters(Arrays.asList(
                new NotPrimaryAlignmentFilter(),
                new DuplicateReadFilter(),
                new InsertSizeFilter(MINIMUM_INSERT_SIZE, MAXIMUM_INSERT_SIZE)
        ));

        log.info("Starting iteration.");
        long nextLogTime = 0;
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Related Classes of htsjdk.samtools.filter.DuplicateReadFilter

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