Package htsjdk.samtools

Examples of htsjdk.samtools.SAMValidationError


        for (final FastqWriters writerMapping : new HashSet<FastqWriters>(writers.values())) {
            writerMapping.closeAll();
        }

        if (firstSeenMates.size() > 0) {
            SAMUtils.processValidationError(new SAMValidationError(SAMValidationError.Type.MATE_NOT_FOUND,
                    "Found " + firstSeenMates.size() + " unpaired mates", null), VALIDATION_STRINGENCY);
        }

        return 0;
    }
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Related Classes of htsjdk.samtools.SAMValidationError

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