Package htsjdk.samtools

Examples of htsjdk.samtools.SAMFileSpan


     */
    public boolean hasFileSpansOverlappingWith( FilePointer other ) {
        for ( Map.Entry<SAMReaderID, SAMFileSpan> thisFilePointerEntry : fileSpans.entrySet() ) {
            GATKBAMFileSpan thisFileSpan = new GATKBAMFileSpan(thisFilePointerEntry.getValue());

            SAMFileSpan otherEntry = other.fileSpans.get(thisFilePointerEntry.getKey());
            if ( otherEntry == null ) {
                continue// no counterpart for this file span in other
            }
            GATKBAMFileSpan otherFileSpan = new GATKBAMFileSpan(otherEntry);

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Related Classes of htsjdk.samtools.SAMFileSpan

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