Package htsjdk.samtools

Examples of htsjdk.samtools.Bin

110
111
112
113
114
115
116
117
118
119
120
            final long readerStartOffset = position();

            int maxChunkCount = 0;

            while(currentBinInLowestLevel < GATKBAMIndex.MAX_BINS && currentLocus != null) {
                final Bin bin = new Bin(referenceSequence,currentBinInLowestLevel);
                final int binStart = index.getFirstLocusInBin(bin);
                final int binStop = index.getLastLocusInBin(bin);

                // In required, pull bin iterator ahead to the point of the next GenomeLoc.
                if(binStop < currentLocus.getStart()) {
View Full Code Here
TOP

Related Classes of htsjdk.samtools.Bin

  • org.broadinstitute.gatk.engine.datasources.reads.BAMSchedule
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.