Package gnu.trove.map.hash

Examples of gnu.trove.map.hash.TLongDoubleHashMap$TValueView

29
30
31
32
33
34
35
*/
public class TIntPairDoubleHashMap {
  private TLongDoubleHashMap map;

  public TIntPairDoubleHashMap() {
    map = new TLongDoubleHashMap(100);
  }
View Full Code Here
33
34
35
36
37
38
39
  public TIntPairDoubleHashMap() {
    map = new TLongDoubleHashMap(100);
  }

  public TIntPairDoubleHashMap(int capacity) {
    map = new TLongDoubleHashMap(capacity);
  }
View Full Code Here
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
      TIntObjectHashMap<TLongDoubleHashMap> lev1 = this.map.get(len1);
      if (lev1 == null) {
        lev1 = new TIntObjectHashMap<TLongDoubleHashMap>();
        map.put(len1, lev1);
      }
      TLongDoubleHashMap lev2 = lev1.get(len2);
      if (lev2 == null) {
        lev2 = new TLongDoubleHashMap();
        lev1.put(len2, lev2);
      }
      final long key = hash(str1, str2);
      if (!lev2.contains(key)) {
        aligner.setSequences(str1, str2);
        aligner.buildMatrix();
        ans = aligner.getAlignmentScore();
        lev2.put(key, ans);
        // if the same length hash them both
        if (str1.length() == str2.length()) {
          lev2.put(hash(str2, str1), ans);
        }
        usedCache = false;
      } else {
        ans = lev2.get(key);
        usedCache = true;
      }
    }
  }
View Full Code Here
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
      TIntObjectHashMap<TLongDoubleHashMap> lev1 = this.map.get(len1);
      if (lev1 == null) {
        lev1 = new TIntObjectHashMap<TLongDoubleHashMap>();
        map.put(len1, lev1);
      }
      TLongDoubleHashMap lev2 = lev1.get(len2);
      if (lev2 == null) {
        lev2 = new TLongDoubleHashMap();
        lev1.put(len2, lev2);
      }
      final long key = hash(str1, str2);
      if (!lev2.contains(key)) {
        aligner.setSequences(str1, str2);
        aligner.buildMatrix();
        ans = aligner.getAlignmentScore();
        lev2.put(key, ans);
        // if the same length hash them both
        if (len1 == len2) {
          lev2.put(hash(str2, str1), ans);
        }
        usedCache = false;
      } else {
        ans = lev2.get(key);
        usedCache = true;
      }
    }
  }
View Full Code Here
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
      TIntObjectHashMap<TLongDoubleHashMap> lev1 = this.map.get(len1);
      if (lev1 == null) {
        lev1 = new TIntObjectHashMap<TLongDoubleHashMap>();
        map.put(len1, lev1);
      }
      TLongDoubleHashMap lev2 = lev1.get(len2);
      if (lev2 == null) {
        lev2 = new TLongDoubleHashMap();
        lev1.put(len2, lev2);
      }
      final long key = hash(str1, str2);
      if (!lev2.contains(key)) {
        aligner.setSequences(str1, str2);
        aligner.buildMatrix();
        ans = aligner.getAlignmentScore();
        lev2.put(key, ans);
        // if the same length hash them both
        if (str1.size() == str2.size()) {
          lev2.put(hash(str2, str1), ans);
        }
        usedCache = false;
      } else {
        ans = lev2.get(key);
        usedCache = true;
      }
    }
  }
View Full Code Here
TOP

Related Classes of gnu.trove.map.hash.TLongDoubleHashMap$TValueView

  • bgu.bio.algorithms.alignment.CacheMemorySequenceAlignment
  • gnu.trove.map.TLongDoubleMap
  • org.getspout.spoutapi.util.map.TIntPairDoubleHashMap
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.