Package gnu.trove.map.hash

Examples of gnu.trove.map.hash.TLongDoubleHashMap$TKeyView

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*/
public class TIntPairDoubleHashMap {
  private TLongDoubleHashMap map;

  public TIntPairDoubleHashMap() {
    map = new TLongDoubleHashMap(100);
  }
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  public TIntPairDoubleHashMap() {
    map = new TLongDoubleHashMap(100);
  }

  public TIntPairDoubleHashMap(int capacity) {
    map = new TLongDoubleHashMap(capacity);
  }
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      TIntObjectHashMap<TLongDoubleHashMap> lev1 = this.map.get(len1);
      if (lev1 == null) {
        lev1 = new TIntObjectHashMap<TLongDoubleHashMap>();
        map.put(len1, lev1);
      }
      TLongDoubleHashMap lev2 = lev1.get(len2);
      if (lev2 == null) {
        lev2 = new TLongDoubleHashMap();
        lev1.put(len2, lev2);
      }
      final long key = hash(str1, str2);
      if (!lev2.contains(key)) {
        aligner.setSequences(str1, str2);
        aligner.buildMatrix();
        ans = aligner.getAlignmentScore();
        lev2.put(key, ans);
        // if the same length hash them both
        if (str1.length() == str2.length()) {
          lev2.put(hash(str2, str1), ans);
        }
        usedCache = false;
      } else {
        ans = lev2.get(key);
        usedCache = true;
      }
    }
  }
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      TIntObjectHashMap<TLongDoubleHashMap> lev1 = this.map.get(len1);
      if (lev1 == null) {
        lev1 = new TIntObjectHashMap<TLongDoubleHashMap>();
        map.put(len1, lev1);
      }
      TLongDoubleHashMap lev2 = lev1.get(len2);
      if (lev2 == null) {
        lev2 = new TLongDoubleHashMap();
        lev1.put(len2, lev2);
      }
      final long key = hash(str1, str2);
      if (!lev2.contains(key)) {
        aligner.setSequences(str1, str2);
        aligner.buildMatrix();
        ans = aligner.getAlignmentScore();
        lev2.put(key, ans);
        // if the same length hash them both
        if (len1 == len2) {
          lev2.put(hash(str2, str1), ans);
        }
        usedCache = false;
      } else {
        ans = lev2.get(key);
        usedCache = true;
      }
    }
  }
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      TIntObjectHashMap<TLongDoubleHashMap> lev1 = this.map.get(len1);
      if (lev1 == null) {
        lev1 = new TIntObjectHashMap<TLongDoubleHashMap>();
        map.put(len1, lev1);
      }
      TLongDoubleHashMap lev2 = lev1.get(len2);
      if (lev2 == null) {
        lev2 = new TLongDoubleHashMap();
        lev1.put(len2, lev2);
      }
      final long key = hash(str1, str2);
      if (!lev2.contains(key)) {
        aligner.setSequences(str1, str2);
        aligner.buildMatrix();
        ans = aligner.getAlignmentScore();
        lev2.put(key, ans);
        // if the same length hash them both
        if (str1.size() == str2.size()) {
          lev2.put(hash(str2, str1), ans);
        }
        usedCache = false;
      } else {
        ans = lev2.get(key);
        usedCache = true;
      }
    }
  }
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Related Classes of gnu.trove.map.hash.TLongDoubleHashMap$TKeyView

  • bgu.bio.algorithms.alignment.CacheMemorySequenceAlignment
  • gnu.trove.map.TLongDoubleMap
  • org.getspout.spoutapi.util.map.TIntPairDoubleHashMap
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