Package fork.lib.bio.data.microarraychip

Examples of fork.lib.bio.data.microarraychip.ChipArrayParser

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    for( int i=0; i<afs.length; i++ ){
        File af= afs[i];
        ChipArrayParser cp = new ChipArrayParser(af, pf, 0, 2);

        File out= new File(od+"/"+FileName.getBaseName(af)+".wig");
        cp.writeToFile(out, FileName.getBaseName(af));
    }
}
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                idval.put(id, Double.parseDouble(idvals.get(id)));
            }



            ChipArrayParser cp = new ChipArrayParser(idreg, idval);

            File out= new File(od+"/"+FileName.getBaseName(af)+".wig");
            cp.writeToFile(out, FileName.getBaseName(af));
        }
    }
}
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    File af= new File(d+"/swr1-chip_htz1d.txt");
   
    //File pf= new File(d+"/test.sam");
   
   
    ChipArrayParser cp = new ChipArrayParser(af, pf);
   
   
    File out= new File(d+"/"+FileName.getBaseName(af)+".wig");
   
    cp.writeToFile(out, FileName.getBaseName(af));
   
}
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Related Classes of fork.lib.bio.data.microarraychip.ChipArrayParser

  • data.cerevisiae.histmod.liu2005_histmods.ProcessData
  • data.cerevisiae.histmod.magraner2014_histmods.ProcessData
  • data.cerevisiae.ranjan2013swr1.ProcessData
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