Package fork.lib.bio.anno.genomic.region

Examples of fork.lib.bio.anno.genomic.region.GenomicRegionsLocator

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    for( int i=0; i<ts.length ; i++ ){
    //for( int i=0; i<1 ; i++ ){
        String t= ts[i];
        String tt= tag+"_"+t;
        File f= new File(d+"/select_"+tt+".bed");
        GenomicRegionsLocator gl= new GenomicRegionsLocator(
                new BedReader(f).getGenomicRegionsBuilder(),
                new BedReader(rf).getGenomicRegionsBuilder()
            );
        File out= new File(od+"/location_"+tt+".bed");
        gl.writeToFile(out);
    }
   
   
   
   
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                }
            }

            String tag= "z"+z+"_ac"+ac;
            new BedExporter(gbde).writeToFile(new File(od+"/select-de_"+tag+".bed"));
            GenomicRegionsLocator gl= new GenomicRegionsLocator(
                        gbde,
                        new BedReader(rf).getGenomicRegionsBuilder()
                    );
            gl.writeToSeparateFiles(
                    new File(od+"/locate-de_"+tag+"_in.txt"),
                    new File(od+"/locate-de_"+tag+"_between.txt")
                    );
           
            new BedExporter(gbac).writeToFile(new File(od+"/select-ac_"+tag+".bed"));
            gl= new GenomicRegionsLocator(
                        gbac,
                        new BedReader(rf).getGenomicRegionsBuilder()
                    );
            gl.writeToSeparateFiles(
                    new File(od+"/locate-ac_"+tag+"_in.txt"),
                    new File(od+"/locate-ac_"+tag+"_between.txt")
                    );
        }
    }
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Related Classes of fork.lib.bio.anno.genomic.region.GenomicRegionsLocator

  • data.cerevisiae.region.aclen.Locate
  • data.cerevisiae.region.wt4krlen.Locate
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