Examples of eu.isas.peptideshaker.utils.Properties

eu.isas.peptideshaker.utils.Properties
This class contains many of the properties that are used during the use of the tool, but that are not stored in the UserProperties.prop file between each run of the program. @author Harald Barsnes

        experiment.addAnalysisSet(sample, analysisSet);


        // Set the project details
        projectDetails = new ProjectDetails();
        projectDetails.setCreationDate(new Date());
        projectDetails.setPeptideShakerVersion(new Properties().getVersion());


        // Get the search parameters
        searchParameters = cliInputBean.getIdentificationParameters();
        String error = PeptideShaker.loadModifications(searchParameters);
        if (error != null) {

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     * @param args the command line arguments (ignored if null)
     */
    public PeptideShakerWrapper(String[] args) {


        // get the version number set in the pom file
        String jarFileName = "PeptideShaker-" + new Properties().getVersion() + ".jar";
        String path = PeptideShaker.getJarFilePath();
        File jarFile = new File(path, jarFileName);
        // get the splash 
        String splash = "peptide-shaker-splash.png";
        String mainClass = "eu.isas.peptideshaker.gui.PeptideShakerGUI";

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Related Classes of eu.isas.peptideshaker.utils.Properties

eu.isas.peptideshaker.cmd.PeptideShakerCLI

eu.isas.peptideshaker.PeptideShakerWrapper

java.io.InputStream

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