Examples of eu.isas.peptideshaker.gui.PtmSiteInferenceDialog

eu.isas.peptideshaker.gui.PtmSiteInferenceDialog
This dialog allows the user to verify/update the modification site. @author Marc Vaudel @author Harald Barsnes

                            }
                        } else if (column == peptidesTable.getColumn("PTM").getModelIndex()) {
                            if (peptidesTable.getValueAt(row, column) != null
                                    && ((Integer) peptidesTable.getValueAt(row, column)).intValue() != -1) {
                                progressDialog.setRunFinished();
                                new PtmSiteInferenceDialog(peptideShakerGUI, getSelectedPeptide(), ptmFactory.getPTM(getSelectedModification()));
                            }
                        }
                    }
                }

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                            }
                        } else if (column == relatedPeptidesTable.getColumn("PTM").getModelIndex()) {
                            if (relatedPeptidesTable.getValueAt(row, column) != null
                                    && ((Integer) relatedPeptidesTable.getValueAt(row, column)).intValue() != -1) {
                                progressDialog.setRunFinished();
                                new PtmSiteInferenceDialog(peptideShakerGUI, getSelectedPeptide(), ptmFactory.getPTM(getSelectedModification()));
                            }
                        }
                    }
                }

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com.compomics.util.experiment.biology.Peptide

com.compomics.util.experiment.biology.PTM

com.compomics.util.experiment.identification.Identification

com.compomics.util.experiment.identification.matches.ProteinMatch

com.compomics.util.gui.error_handlers.HelpDialog

com.compomics.util.gui.renderers.AlignedTableCellRenderer

com.compomics.util.preferences.ModificationProfile

eu.isas.peptideshaker.gui.tabpanels.PtmPanel

eu.isas.peptideshaker.myparameters.PSMaps

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