Examples of eu.isas.peptideshaker.followup.SpectrumExporter

            new Thread("SaveThread") {
                @Override
                public void run() {


                    try {
                        SpectrumExporter spectrumExporter = new SpectrumExporter(peptideShakerGUI.getIdentification());
                        spectrumExporter.exportSpectra(selectedFolder, progressDialog, SpectrumExporter.ExportType.getTypeFromIndex(spectrumValidationCmb.getSelectedIndex()), peptideShakerGUI.getSequenceMatchingPreferences());


                        boolean processCancelled = progressDialog.isRunCanceled();
                        progressDialog.setRunFinished();


                        if (!processCancelled) {

    public static void exportSpectra(FollowUpCLIInputBean followUpCLIInputBean, Identification identification, WaitingHandler waitingHandler, SequenceMatchingPreferences sequenceMatchingPreferences) throws IOException, MzMLUnmarshallerException, SQLException, ClassNotFoundException, InterruptedException {
        File exportFolder = followUpCLIInputBean.getSpectrumExportFolder();
        if (!exportFolder.exists()) {
            exportFolder.mkdir();
        }
        SpectrumExporter spectrumExporter = new SpectrumExporter(identification);
        spectrumExporter.exportSpectra(exportFolder, waitingHandler, SpectrumExporter.ExportType.getTypeFromIndex(followUpCLIInputBean.getSpectrumExportTypeIndex()), sequenceMatchingPreferences);
    }

Related Classes of eu.isas.peptideshaker.followup.SpectrumExporter

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