Package eu.isas.peptideshaker.filtering

Examples of eu.isas.peptideshaker.filtering.AssumptionFilter


     * @return the default filters for setting a match as doubtful
     */
    public static ArrayList<AssumptionFilter> getDefaultAssumptionFilters() {
        ArrayList<AssumptionFilter> filters = new ArrayList<AssumptionFilter>();

        AssumptionFilter psmFilter = new AssumptionFilter(">30% Fragment Ion Sequence Coverage");
        psmFilter.setDescription(">30% sequence coverage by fragment ions");
        psmFilter.setSequenceCoverage(30.0);
        psmFilter.setSequenceCoverageComparison(RowFilter.ComparisonType.AFTER);
        filters.add(psmFilter);

        return filters;
    }
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