Examples of edu.stanford.genetics.treeview.HeaderInfo

edu.stanford.genetics.treeview.HeaderInfo

Interface to access header info about genes or arrays or treenodes This interface is used many ways. The basic idea is that the "Header" refers to which gene, array, or node you want information about, whereas the "Name" is which header you want. Thus, getNumHeaders() is the number of genes, whereas getNumNames() is the number of headers for each gene. Conceptually, the objects that are annotated (genes, arrays, nodes) can be thought of as rows, and the various names as the headers of columns of information about them. For historical reasons, the actual annotations are called the headers, and the column headers are called names (i.e. names of the annotation). This is because the first HeaderInfo objects represented subtables of the CDT file. @author Alok Saldanha @version $Revision: 1.12 $ $Date: 2005-11-25 07:24:08 $

    JComboBox statPulldown;
    StatPanel(String title) {
      super(false);
      
      DataModel dataModel = frame.getDataModel();
      HeaderInfo arrayInfo = dataModel.getArrayHeaderInfo();
      HeaderInfo geneInfo  = dataModel.getGeneHeaderInfo();
      //    String [][] aHeaders = dataModel.getArrayHeaders();
      //    int gidRow = dataModel.getGIDIndex();
      int gidRow = 0;
      npre =  geneInfo.getNumNames();
      nexpr = arrayInfo.getNumHeaders();
      String [] statNames = new String[npre + nexpr + 1];
      // Index
      statNames[0] = "INDEX";
      // stat columns
      String [] pre = geneInfo.getNames();
      for (int i = 0; i < npre; i++) {
        statNames[i+1] = pre[i];        
      }
      // experiment ratios
      for (int i = 0; i < nexpr; i++) {

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