ClassifierFactory.setDataProp(propfile, false);
}
if (format == null) {
format = CmdOptions.DEFAULT_FORMAT;
}
ClassifierFactory factory = ClassifierFactory.getFactory(gene);
Classifier aClassifier = factory.createClassifier();
SeqReader parser = new SequenceReader(new File(inputFile));
BufferedWriter wt = new BufferedWriter(new FileWriter(outFile));
Sequence pSeq = null;
try {