Package edu.msu.cme.rdp.classifier.train.validation

Examples of edu.msu.cme.rdp.classifier.train.validation.ValidationClassificationResult

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            int size = ((List) aPath.get(i)).size();
            if (size == 0) {
                outFile.write("\n");
                continue;
            }
            ValidationClassificationResult result = (ValidationClassificationResult) ((List) aPath.get(i)).get(size - 1);

            outFile.write(((Taxonomy) ((HierarchyTree) result.getBestClass()).getTaxonomy()).getTaxID() + "\n");
        }
    }
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        }
        out.write("\n");

        i = resultFacade.getRankAssignment().iterator();
        while (i.hasNext()) {
            ValidationClassificationResult result = (ValidationClassificationResult) i.next();
            out.write(((HierarchyTree) result.getBestClass()).getName() + "\t");

        }

        out.write("\n");
        i = resultFacade.getRankAssignment().iterator();
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        // compare the true taxon and the hit taxon with same rank.
        while (trueParent != null) {

            if (!trueParent.isSingleton()) {
                ValidationClassificationResult hit = null;
                for (int i = 0; i < hitList.size(); i++) {
                    ValidationClassificationResult tmp = (ValidationClassificationResult) hitList.get(i);
                    if ((trueParent.getTaxonomy().getHierLevel()).equals(tmp.getBestClass().getTaxonomy().getHierLevel())) {
                        hit = tmp;
                        break;
                    }
                }
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        // update the total count and misclassified count

        while (trueParent != null) {

            if (!trueParent.isSingleton()) {
                ValidationClassificationResult hit = null;
                for (int i = 0; i < hitList.size(); i++) {
                    ValidationClassificationResult tmp = (ValidationClassificationResult) hitList.get(i);
                    if ((trueParent.getTaxonomy().getHierLevel()).equals(tmp.getBestClass().getTaxonomy().getHierLevel())) {
                        hit = tmp;
                        break;
                    }
                }
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Related Classes of edu.msu.cme.rdp.classifier.train.validation.ValidationClassificationResult

  • edu.msu.cme.rdp.classifier.train.validation.leaveoneout.LeaveOneOutTester
  • edu.msu.cme.rdp.classifier.train.validation.movingwindow.WindowTester
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