Package edu.cornell.med.icb.goby.counts

Examples of edu.cornell.med.icb.goby.counts.CountsReader

117
118
119
120
121
122
123
124
125
126
127
    public List<LocusScore> getSummaryScoresForRange(String chr, int startLocation, int endLocation, int zoom) {
        if ("All".equals(chr)) return new Vector<LocusScore>();
        try {
            currentMax = 0;
            CountsReader reader = getCountsReader(chr);
            int initialStartPosition = startLocation;
            int binSize = getBinSize(startLocation, endLocation);

            /*       LOG.info(String.format("Call in getSummaryScoresForRange %d-%d zoom %d binSize=%d ", startLocation, endLocation,
                       zoom, binSize));
View Full Code Here
198
199
200
201
202
203
204
205
206
207
        if (ids.contains(chr)) {
            return counts.getCountReader(chr);
        }
        if (!someIdsStartWithChr) {

            CountsReader reader = counts.getCountReader(chr.replaceFirst("chr", ""));
            if (reader != null) return reader;
        }
        return counts.getCountReader(chr);
    }
View Full Code Here
TOP

Related Classes of edu.cornell.med.icb.goby.counts.CountsReader

  • org.broad.igv.goby.GobyCountArchiveDataSource
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.